Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1026252	0.83[EUR][1000 genomes]
rs1026253	0.83[EUR][1000 genomes]
rs1026254	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10736700	0.83[EUR][1000 genomes]
rs10736701	0.83[EUR][1000 genomes]
rs11600716	1.00[YRI][hapmap]
rs11605427	1.00[YRI][hapmap]
rs1562990	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17528859	1.00[YRI][hapmap]
rs17529983	1.00[YRI][hapmap]
rs2847655	1.00[YRI][hapmap]
rs2847666	1.00[YRI][hapmap]
rs2847667	1.00[YRI][hapmap]
rs4938932	0.83[EUR][1000 genomes]
rs4939312	1.00[YRI][hapmap]
rs498100	1.00[YRI][hapmap]
rs611418	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs636317	0.83[EUR][1000 genomes]
rs636341	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs655231	0.85[CEU][hapmap];0.83[MEX][hapmap]
rs672399	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7128450	0.83[EUR][1000 genomes]
rs72920867	0.81[AMR][1000 genomes]
rs7930318	0.83[EUR][1000 genomes]
rs7933202	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832174	chr11:59909267-60073908	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1053558	chr11:59979460-60061209	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3435505	chr11:60006972-60051885	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1582763	MS4A4A	cis	multi-tissue	Pritchard

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:60018200-60022000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:60020000-60023400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:60021000-60022600	ZNF genes & repeats	Dnd41	blood
4	chr11:60021400-60022400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
5	chr11:60021400-60022400	Enhancers	HMEC	breast
6	chr11:60021600-60022600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

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