Variant report

Variant	rs1584894
Chromosome Location	chr6:81332314-81332315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1598166	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1840333	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2168107	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2444805	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2444806	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2496676	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2496677	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2496679	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2496683	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2503727	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2503730	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927397	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1020533	chr6:81288890-81406533	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv538340	chr6:81288890-81406533	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv604085	chr6:81297890-81439973	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1015520	chr6:81309213-81374699	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3410896	chr6:81329433-81332556	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
9	esv3360402	chr6:81329758-81332606	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
10	esv3331418	chr6:81330458-81333006	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
11	esv3422112	chr6:81331083-81332431	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81332000-81333000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:81332200-81332400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:81332200-81332600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:81332200-81332600	Enhancers	Lung	lung
5	chr6:81332200-81332800	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr6:81332200-81332800	Enhancers	Liver	Liver
7	chr6:81332200-81332800	Enhancers	Left Ventricle	heart
8	chr6:81332200-81333000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:81332200-81333000	Enhancers	HMEC	breast
10	chr6:81332200-81333600	Enhancers	HSMMtube	muscle
11	chr6:81332200-81333800	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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