Variant report

Variant	rs1588532
Chromosome Location	chr8:49963034-49963035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12056899	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13277549	1.00[AFR][1000 genomes]
rs1628843	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2667280	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2667288	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2667291	0.81[EUR][1000 genomes]
rs341803	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs341811	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs341814	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34606575	1.00[AFR][1000 genomes]
rs62507216	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6472144	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs710894	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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