Variant report

Variant	rs158918
Chromosome Location	chr5:60242121-60242122
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:48)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:48 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:60240584-60242125	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr5:60240225-60242136	MCF10A-Er-Src	breast:	n/a	n/a
3	MAX	chr5:60240654-60242137	K562	blood:	n/a	n/a
4	MAX	chr5:60240708-60242143	Hela-S3	cervix:	n/a	n/a
5	NFYB	chr5:60241896-60242305	GM12878	blood:	n/a	n/a
6	E2F6	chr5:60241134-60242190	H1-hESC	embryonic stem cell:	n/a	n/a
7	MAX	chr5:60241124-60242246	MCF-7	breast:	n/a	n/a
8	MAX	chr5:60240540-60242241	HCT-116	colon:	n/a	n/a
9	MAX	chr5:60240691-60242167	GM12878	blood:	n/a	n/a
10	RCOR1	chr5:60240701-60242268	K562	blood:	n/a	n/a
11	MAX	chr5:60240632-60242193	NB4	blood:	n/a	n/a
12	SIN3AK20	chr5:60240579-60242297	MCF-7	breast:	n/a	n/a
13	TBP	chr5:60240357-60242128	K562	blood:	n/a	n/a
14	RCOR1	chr5:60241466-60242208	Hela-S3	cervix:	n/a	n/a
15	MXI1	chr5:60240583-60242413	IMR90	lung:	n/a	n/a
16	MXI1	chr5:60240370-60242656	SK-N-SH	brain:	n/a	n/a
17	E2F6	chr5:60240662-60242194	K562	blood:	n/a	n/a
18	E2F6	chr5:60240569-60242292	H1-hESC	embryonic stem cell:	n/a	n/a
19	MAX	chr5:60240557-60242230	HepG2	liver:	n/a	n/a
20	MAX	chr5:60241111-60242202	A549	lung:	n/a	n/a
21	RCOR1	chr5:60241908-60242274	GM12878	blood:	n/a	n/a
22	HA-E2F1	chr5:60240733-60242173	MCF-7	breast:	n/a	n/a
23	CEBPB	chr5:60240711-60242121	Hela-S3	cervix:	n/a	n/a
24	MAX	chr5:60240589-60242186	ECC-1	luminal epithelium:	n/a	n/a
25	HCFC1	chr5:60240422-60242289	Hela-S3	cervix:	n/a	n/a
26	MAX	chr5:60240580-60242223	H1-hESC	embryonic stem cell:	n/a	n/a
27	MAX	chr5:60240573-60242140	MCF-7	breast:	n/a	n/a
28	TBP	chr5:60240642-60242123	Hela-S3	cervix:	n/a	n/a
29	MAX	chr5:60240669-60242171	Hela-S3	cervix:	n/a	n/a
30	POLR2A	chr5:60240620-60242183	Hela-S3	cervix:	n/a	n/a
31	WRNIP1	chr5:60241536-60242156	GM12878	blood:	n/a	n/a
32	POLR2A	chr5:60240651-60242230	MCF10A-Er-Src	breast:	n/a	n/a
33	MAX	chr5:60240606-60242159	H1-hESC	embryonic stem cell:	n/a	n/a
34	MAX	chr5:60240578-60242287	ECC-1	luminal epithelium:	n/a	n/a
35	MAX	chr5:60240574-60242189	SK-N-SH	brain:	n/a	n/a
36	GTF2F1	chr5:60240684-60242144	Hela-S3	cervix:	n/a	n/a
37	BHLHE40	chr5:60241820-60242140	K562	blood:	n/a	n/a
38	MAX	chr5:60240567-60242220	A549	lung:	n/a	n/a
39	EGR1	chr5:60241894-60242130	K562	blood:	n/a	n/a
40	MAX	chr5:60240572-60242135	K562	blood:	n/a	n/a
41	NFIC	chr5:60241390-60242191	ECC-1	luminal epithelium:	n/a	chr5:60241896-60241912 chr5:60241895-60241912
42	MAX	chr5:60241122-60242193	HepG2	liver:	n/a	n/a
43	MAX	chr5:60240712-60242140	H1-hESC	embryonic stem cell:	n/a	n/a
44	MXI1	chr5:60240671-60242187	HepG2	liver:	n/a	n/a
45	MYC	chr5:60240692-60242217	MCF10A-Er-Src	breast:	n/a	n/a
46	MYC	chr5:60240708-60242383	MCF10A-Er-Src	breast:	n/a	n/a
47	MYC	chr5:60240614-60242192	K562	blood:	n/a	n/a
48	SIN3AK20	chr5:60241858-60242154	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:60241626..60243235-chr5:60252135..60253778,2	K562	blood:
2	chr5:59995886..59998322-chr5:60239584..60242446,2	MCF-7	breast:
3	chr5:60138467..60140103-chr5:60240605..60242461,2	MCF-7	breast:
4	chr5:60234642..60236205-chr5:60241471..60243288,2	MCF-7	breast:
5	chr5:59995106..59997535-chr5:60240120..60242292,3	K562	blood:

No data

Variant related genes	Relation type
ERCC8	TF binding region
ENSG00000035499	Chromatin interaction
ENSG00000164181	Chromatin interaction

Extended variants
information (count: 211 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:184)

rs_ID	r²[population]
rs10062465	0.85[ASN][1000 genomes]
rs10064187	0.89[ASN][1000 genomes]
rs10076937	0.83[ASN][1000 genomes]
rs1020371	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1038144	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10471502	0.91[ASN][1000 genomes]
rs10514906	0.91[ASN][1000 genomes]
rs11744756	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11957772	0.91[ASN][1000 genomes]
rs124898	0.86[ASN][1000 genomes]
rs12518865	0.91[ASN][1000 genomes]
rs12522154	0.83[ASN][1000 genomes]
rs13155076	0.83[ASN][1000 genomes]
rs13168191	0.91[ASN][1000 genomes]
rs1382914	0.91[ASN][1000 genomes]
rs158564	0.91[ASN][1000 genomes]
rs158570	0.89[ASN][1000 genomes]
rs158571	0.94[ASN][1000 genomes]
rs158696	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs158697	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs158699	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs158700	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs158914	0.94[ASN][1000 genomes]
rs158915	0.94[ASN][1000 genomes]
rs158919	0.94[ASN][1000 genomes]
rs158922	0.94[ASN][1000 genomes]
rs158923	0.91[ASN][1000 genomes]
rs158924	0.91[ASN][1000 genomes]
rs158927	0.89[ASN][1000 genomes]
rs158929	0.89[ASN][1000 genomes]
rs158931	0.94[ASN][1000 genomes]
rs158932	0.92[ASN][1000 genomes]
rs158933	0.94[ASN][1000 genomes]
rs158934	0.94[ASN][1000 genomes]
rs158935	0.94[ASN][1000 genomes]
rs158936	0.94[ASN][1000 genomes]
rs158937	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158938	0.94[ASN][1000 genomes]
rs159357	0.86[ASN][1000 genomes]
rs159358	0.86[ASN][1000 genomes]
rs159371	0.86[ASN][1000 genomes]
rs159374	0.86[ASN][1000 genomes]
rs159375	0.86[ASN][1000 genomes]
rs159376	0.86[ASN][1000 genomes]
rs159377	0.86[ASN][1000 genomes]
rs159378	0.86[ASN][1000 genomes]
rs159380	0.86[ASN][1000 genomes]
rs162227	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs162228	0.89[ASN][1000 genomes]
rs162234	0.91[ASN][1000 genomes]
rs162238	0.91[ASN][1000 genomes]
rs162241	0.91[ASN][1000 genomes]
rs162242	0.91[ASN][1000 genomes]
rs162243	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs162244	0.91[ASN][1000 genomes]
rs162246	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs162248	0.91[ASN][1000 genomes]
rs162251	0.91[ASN][1000 genomes]
rs168710	0.91[ASN][1000 genomes]
rs16878547	0.97[ASN][1000 genomes]
rs16878548	0.97[ASN][1000 genomes]
rs169700	0.91[ASN][1000 genomes]
rs172348	0.91[ASN][1000 genomes]
rs172945	0.91[ASN][1000 genomes]
rs1820082	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs182410	0.86[ASN][1000 genomes]
rs1867598	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs187459	0.91[ASN][1000 genomes]
rs1989653	0.97[ASN][1000 genomes]
rs2080869	0.91[ASN][1000 genomes]
rs2120954	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2120955	0.89[ASN][1000 genomes]
rs2263514	0.91[ASN][1000 genomes]
rs2270822	0.91[ASN][1000 genomes]
rs248677	0.91[ASN][1000 genomes]
rs248682	0.91[ASN][1000 genomes]
rs248683	0.91[ASN][1000 genomes]
rs248685	0.91[ASN][1000 genomes]
rs248688	0.91[ASN][1000 genomes]
rs2545475	0.86[ASN][1000 genomes]
rs2545478	0.81[ASN][1000 genomes]
rs2545493	0.88[ASN][1000 genomes]
rs2545503	0.86[ASN][1000 genomes]
rs256375	0.86[ASN][1000 genomes]
rs256376	0.86[ASN][1000 genomes]
rs2590570	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2619890	0.91[ASN][1000 genomes]
rs2619893	0.91[ASN][1000 genomes]
rs2650512	0.91[ASN][1000 genomes]
rs2650517	0.91[ASN][1000 genomes]
rs2694518	0.89[ASN][1000 genomes]
rs2694528	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2694530	0.91[ASN][1000 genomes]
rs2694531	0.91[ASN][1000 genomes]
rs28407266	0.89[ASN][1000 genomes]
rs290503	0.91[ASN][1000 genomes]
rs290506	0.91[ASN][1000 genomes]
rs290507	0.91[ASN][1000 genomes]
rs290511	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs290513	0.91[ASN][1000 genomes]
rs290514	0.89[ASN][1000 genomes]
rs290515	0.89[ASN][1000 genomes]
rs290517	0.81[EUR][1000 genomes]
rs2950235	0.91[ASN][1000 genomes]
rs295522	0.86[ASN][1000 genomes]
rs295524	0.86[ASN][1000 genomes]
rs295531	0.86[ASN][1000 genomes]
rs295533	0.91[ASN][1000 genomes]
rs295551	0.86[ASN][1000 genomes]
rs295559	0.86[ASN][1000 genomes]
rs295560	0.86[ASN][1000 genomes]
rs295561	0.86[ASN][1000 genomes]
rs295563	0.86[ASN][1000 genomes]
rs295564	0.86[ASN][1000 genomes]
rs295566	0.83[ASN][1000 genomes]
rs295569	0.86[ASN][1000 genomes]
rs295573	0.86[ASN][1000 genomes]
rs295578	0.86[ASN][1000 genomes]
rs3101879	0.91[ASN][1000 genomes]
rs3108388	0.91[ASN][1000 genomes]
rs3117	0.83[ASN][1000 genomes]
rs329622	0.91[ASN][1000 genomes]
rs329623	0.91[ASN][1000 genomes]
rs329624	0.91[ASN][1000 genomes]
rs329625	0.91[ASN][1000 genomes]
rs329626	0.91[ASN][1000 genomes]
rs34591	0.91[ASN][1000 genomes]
rs34592	0.91[ASN][1000 genomes]
rs34593	0.91[ASN][1000 genomes]
rs34610	0.86[ASN][1000 genomes]
rs34614	0.86[ASN][1000 genomes]
rs34621	0.86[ASN][1000 genomes]
rs34623	0.86[ASN][1000 genomes]
rs34624	0.86[ASN][1000 genomes]
rs34636	0.86[ASN][1000 genomes]
rs34637	0.86[ASN][1000 genomes]
rs34638	0.91[ASN][1000 genomes]
rs34639	0.91[ASN][1000 genomes]
rs34643	0.91[ASN][1000 genomes]
rs34644	0.91[ASN][1000 genomes]
rs35546392	0.86[ASN][1000 genomes]
rs35617853	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35766700	0.83[ASN][1000 genomes]
rs35948426	0.83[ASN][1000 genomes]
rs39661	0.86[ASN][1000 genomes]
rs40084	0.91[ASN][1000 genomes]
rs40421	0.91[ASN][1000 genomes]
rs4141502	0.91[ASN][1000 genomes]
rs4235483	0.83[ASN][1000 genomes]
rs4235484	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs42437	0.91[ASN][1000 genomes]
rs4546327	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4647102	0.83[ASN][1000 genomes]
rs4647138	0.83[ASN][1000 genomes]
rs4647139	0.83[ASN][1000 genomes]
rs4647151	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4699963	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4699967	0.91[ASN][1000 genomes]
rs4700406	0.91[ASN][1000 genomes]
rs4700410	0.82[ASN][1000 genomes]
rs56409036	0.91[ASN][1000 genomes]
rs59292447	0.91[ASN][1000 genomes]
rs59797139	0.81[ASN][1000 genomes]
rs6862622	0.91[ASN][1000 genomes]
rs6863749	0.91[ASN][1000 genomes]
rs6868884	0.91[ASN][1000 genomes]
rs6869073	0.86[ASN][1000 genomes]
rs6869454	0.91[ASN][1000 genomes]
rs6878124	0.91[ASN][1000 genomes]
rs6885989	0.83[ASN][1000 genomes]
rs6886481	0.91[ASN][1000 genomes]
rs6893210	0.91[ASN][1000 genomes]
rs723276	0.91[ASN][1000 genomes]
rs7712364	0.91[ASN][1000 genomes]
rs7718028	0.91[ASN][1000 genomes]
rs7723754	0.91[ASN][1000 genomes]
rs810883	0.86[ASN][1000 genomes]
rs810884	0.86[ASN][1000 genomes]
rs9291702	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs929780	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs973304	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs976080	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9763418	0.83[ASN][1000 genomes]
rs976581	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934153	chr5:60004982-60309751	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv949662	chr5:60047974-60488379	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1017095	chr5:60050600-60414783	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv933326	chr5:60074031-60413061	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv881712	chr5:60116613-60266875	Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv881713	chr5:60116613-60305125	Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv598305	chr5:60116613-60308836	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv881714	chr5:60116613-60313015	Bivalent Enhancer Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv881715	chr5:60116613-60356423	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv598306	chr5:60129361-60266875	Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	nsv598307	chr5:60129361-60308836	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
12	nsv881716	chr5:60129361-60313015	Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
13	nsv462199	chr5:60129361-60329624	Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
14	nsv598308	chr5:60129361-60329624	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
15	nsv462200	chr5:60135985-60266875	Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
16	nsv598309	chr5:60135985-60266875	Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
17	nsv598310	chr5:60135985-60308836	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
18	nsv598311	chr5:60136626-60308836	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
19	nsv520871	chr5:60141245-60320157	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
20	nsv881717	chr5:60141245-60372582	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
21	nsv598312	chr5:60147754-60313015	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
22	nsv881718	chr5:60147754-60313015	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
23	nsv869065	chr5:60180775-60428760	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
24	nsv1025896	chr5:60190594-60255004	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
25	nsv933573	chr5:60224875-60309751	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
26	nsv881721	chr5:60232646-60344399	Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
27	nsv933769	chr5:60240706-60309751	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60239600-60242200	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr5:60239600-60242400	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr5:60239600-60242400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:60239600-60242400	Active TSS	Right Atrium	heart
5	chr5:60239600-60242600	Active TSS	A549	lung
6	chr5:60239800-60242200	Active TSS	Colonic Mucosa	Colon
7	chr5:60239800-60242800	Active TSS	Psoas Muscle	Psoas
8	chr5:60240000-60242200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:60240000-60242200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr5:60240000-60242200	Active TSS	Fetal Stomach	stomach
11	chr5:60240000-60242200	Active TSS	Gastric	stomach
12	chr5:60240000-60242200	Active TSS	Left Ventricle	heart
13	chr5:60240000-60242200	Active TSS	Ovary	ovary
14	chr5:60240000-60242400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr5:60240000-60242600	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr5:60240000-60242600	Active TSS	GM12878-XiMat	blood
17	chr5:60240000-60242600	Active TSS	K562	blood
18	chr5:60240200-60242200	Active TSS	H9 Cell Line	embryonic stem cell
19	chr5:60240200-60242200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr5:60240200-60242200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr5:60240200-60242200	Active TSS	Muscle Satellite Cultured Cells	--
22	chr5:60240200-60242200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr5:60240200-60242200	Active TSS	Brain Hippocampus Middle	brain
24	chr5:60240200-60242200	Active TSS	Esophagus	oesophagus
25	chr5:60240200-60242200	Active TSS	Fetal Intestine Large	intestine
26	chr5:60240200-60242200	Active TSS	Fetal Kidney	kidney
27	chr5:60240200-60242200	Active TSS	Lung	lung
28	chr5:60240200-60242200	Active TSS	Pancreas	Pancrea
29	chr5:60240200-60242400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr5:60240200-60242400	Active TSS	Fetal Intestine Small	intestine
31	chr5:60240200-60242400	Active TSS	HSMM	muscle
32	chr5:60240200-60242600	Active TSS	Brain Germinal Matrix	brain
33	chr5:60240200-60242600	Active TSS	Hela-S3	cervix
34	chr5:60240200-60242600	Active TSS	NHLF	lung
35	chr5:60240200-60242800	Active TSS	NHDF-Ad	bronchial
36	chr5:60240200-60243000	Active TSS	NHEK	skin
37	chr5:60240400-60242200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr5:60240400-60242200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr5:60240400-60242200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr5:60240400-60242200	Active TSS	Colon Smooth Muscle	Colon
41	chr5:60240400-60242200	Active TSS	Right Ventricle	heart
42	chr5:60240400-60242200	Active TSS	Stomach Mucosa	stomach
43	chr5:60240400-60242200	Active TSS	Thymus	Thymus
44	chr5:60240400-60242200	Active TSS	HSMMtube	muscle
45	chr5:60240400-60242200	Active TSS	NH-A	brain
46	chr5:60240400-60242400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr5:60240400-60242400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr5:60240400-60242400	Active TSS	Pancreatic Islets	Pancreatic Islet
49	chr5:60240400-60242400	Active TSS	Fetal Muscle Leg	muscle
50	chr5:60240400-60242400	Active TSS	Rectal Smooth Muscle	rectum

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