Variant report

Variant	rs1591250
Chromosome Location	chr10:25674081-25674082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25673293..25674174-chr10:25782368..25783117,5	MCF-7	breast:

Extended variants
information (count: 147 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:143)

rs_ID	r²[population]
rs10399962	0.87[JPT][hapmap]
rs10508694	0.93[JPT][hapmap]
rs10741075	0.90[CEU][hapmap]
rs10741077	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs10764539	0.93[JPT][hapmap]
rs10764543	0.93[JPT][hapmap]
rs10828770	0.90[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap]
rs10828774	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs10828775	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs10828777	0.95[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.93[JPT][hapmap];0.85[TSI][hapmap]
rs10828778	0.95[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap]
rs10828791	0.93[JPT][hapmap]
rs10828792	0.93[JPT][hapmap]
rs10828793	0.93[JPT][hapmap]
rs10828807	0.87[JPT][hapmap]
rs11014527	0.87[JPT][hapmap]
rs11014528	0.93[JPT][hapmap]
rs11014529	0.93[JPT][hapmap]
rs11014530	0.93[JPT][hapmap]
rs11014550	0.93[JPT][hapmap]
rs11014553	0.93[JPT][hapmap]
rs11014554	0.93[JPT][hapmap]
rs11014558	0.87[JPT][hapmap]
rs11014559	0.87[JPT][hapmap]
rs1122775	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1122776	0.85[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.92[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1148154	0.84[CHD][hapmap];0.88[GIH][hapmap];0.93[JPT][hapmap]
rs11818261	0.93[JPT][hapmap]
rs12240665	0.93[JPT][hapmap]
rs12249852	0.93[JPT][hapmap]
rs12251868	0.93[JPT][hapmap]
rs12251917	0.93[JPT][hapmap]
rs12254479	0.93[JPT][hapmap]
rs12256851	0.93[JPT][hapmap]
rs12258671	0.93[JPT][hapmap]
rs12259043	0.93[JPT][hapmap]
rs12259696	0.93[JPT][hapmap]
rs12358447	0.93[JPT][hapmap]
rs12762462	0.93[JPT][hapmap]
rs12773262	0.93[JPT][hapmap]
rs1329259	0.95[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap]
rs1329263	0.95[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap]
rs1329264	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1329265	0.95[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1340002	0.86[JPT][hapmap]
rs1341963	0.90[CHD][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs1341964	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341966	0.93[CHB][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1410932	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[YRI][hapmap]
rs1410935	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs1413397	1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs1576317	0.95[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1576318	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1576320	0.95[CEU][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1576321	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1590836	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1591249	0.95[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1612200	0.95[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1626372	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1628986	0.86[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.93[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1630323	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1632593	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16925850	0.80[JPT][hapmap]
rs1754251	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs1754253	0.86[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1754254	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1754255	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1754256	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1754257	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754258	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1754260	0.95[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1754264	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1754265	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1754268	0.95[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1754269	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1754271	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1760716	0.84[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];0.93[JPT][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1760718	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.93[JPT][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1760726	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1760727	0.95[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.93[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1760728	0.95[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.93[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1760729	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1760730	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1760733	0.95[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1760734	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1760735	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1760758	0.80[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs1760759	0.93[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs1760762	0.95[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1760763	0.95[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1760764	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1760765	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1760766	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs1760767	0.86[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.93[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]
rs1773604	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1773607	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1773608	0.95[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1773609	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1773612	0.86[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1773614	0.95[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1773616	0.95[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.93[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1773617	0.95[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap]
rs1773618	0.85[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1773622	0.90[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1773623	0.95[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1773625	0.84[CHD][hapmap];0.88[GIH][hapmap];0.93[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]
rs1773649	0.86[CHB][hapmap];0.90[CHD][hapmap];0.81[GIH][hapmap];0.93[JPT][hapmap]
rs1773650	0.86[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap]
rs1773689	0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs1773690	0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs1812401	0.92[CHB][hapmap]
rs1855461	0.95[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap]
rs2795044	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.93[JPT][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2807248	0.86[CHB][hapmap];0.85[GIH][hapmap]
rs2807253	0.86[CHB][hapmap];0.87[CHD][hapmap];0.85[JPT][hapmap]
rs2807255	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.93[JPT][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4351726	0.95[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4431923	0.92[JPT][hapmap]
rs489052	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs489186	0.93[JPT][hapmap]
rs495338	0.80[CEU][hapmap];0.86[CHB][hapmap];0.87[CHD][hapmap];0.83[GIH][hapmap];0.93[JPT][hapmap]
rs495456	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs509285	0.86[CHB][hapmap];0.87[CHD][hapmap];0.93[JPT][hapmap]
rs516071	0.86[CHB][hapmap];0.84[CHD][hapmap];0.93[JPT][hapmap]
rs541206	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs543850	0.86[CHB][hapmap];0.90[CHD][hapmap];0.87[JPT][hapmap]
rs558947	0.80[JPT][hapmap]
rs573812	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs7079892	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs7091686	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7094439	0.93[JPT][hapmap]
rs722537	0.80[JPT][hapmap]
rs7924230	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs824145	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs824146	0.86[CHB][hapmap];0.81[CHD][hapmap];0.80[JPT][hapmap]
rs824590	0.89[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs824591	0.84[MEX][hapmap];0.80[MKK][hapmap]
rs824592	1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs824593	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs824597	0.85[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.93[JPT][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs824598	0.85[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs824599	0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs862192	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3342880	chr10:25644995-25682820	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv550226	chr10:25653017-25693426	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25671000-25677000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:25673000-25677200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:25673000-25679200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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