Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs153537	0.84[EUR][1000 genomes]
rs153538	0.84[EUR][1000 genomes]
rs154097	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs154099	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs154106	0.83[EUR][1000 genomes]
rs154107	0.84[EUR][1000 genomes]
rs154695	0.85[EUR][1000 genomes]
rs154696	0.85[EUR][1000 genomes]
rs154700	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs154702	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs159494	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs159589	0.85[EUR][1000 genomes]
rs169953	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1896778	0.84[EUR][1000 genomes]
rs253725	0.84[EUR][1000 genomes]
rs253727	0.84[EUR][1000 genomes]
rs253728	0.82[EUR][1000 genomes]
rs253729	0.84[EUR][1000 genomes]
rs253730	0.84[EUR][1000 genomes]
rs2584910	0.84[EUR][1000 genomes]
rs29846	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs29847	1.00[EUR][1000 genomes]
rs29850	0.85[EUR][1000 genomes]
rs29853	0.85[EUR][1000 genomes]
rs388795	0.84[EUR][1000 genomes]
rs39580	0.85[EUR][1000 genomes]
rs42390	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs43166	0.85[EUR][1000 genomes]
rs518297	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020899	chr5:151412785-151516788	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv5071	chr5:151438330-151472013	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv508384	chr5:151438582-151487326	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151451000-151453400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr5:151451400-151453600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr5:151451600-151453400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:151452000-151453600	Enhancers	Brain Germinal Matrix	brain
5	chr5:151452600-151453400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:151452600-151453800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:151452800-151453400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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