Variant report
| Variant | rs159806 |
|---|---|
| Chromosome Location | chr5:151417387-151417388 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs150566 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs153528 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs154683 | 0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs159805 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs159807 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs159810 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs159812 | 0.82[AFR][1000 genomes] |
| rs159813 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs159931 | 0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs159933 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs22047 | 0.82[AFR][1000 genomes] |
| rs255468 | 0.84[AFR][1000 genomes] |
| rs255475 | 0.85[AFR][1000 genomes] |
| rs255486 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs29657 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs29660 | 0.87[AFR][1000 genomes] |
| rs29667 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs302389 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs39786 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs707165 | 0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1020223 | chr5:151383539-151417923 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv1020899 | chr5:151412785-151516788 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:151416000-151417800 | Weak transcription | Primary T regulatory cells fromperipheralblood | blood |
