Variant report

Variant	rs159813
Chromosome Location	chr5:151406018-151406019
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs150566	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs153528	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs154683	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs159805	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs159806	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs159807	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs159810	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs159812	0.89[AFR][1000 genomes]
rs159931	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159933	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs22047	0.89[AFR][1000 genomes]
rs255468	0.82[AFR][1000 genomes]
rs255486	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs29657	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs29660	0.82[AFR][1000 genomes]
rs29667	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs302389	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs39786	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs707165	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020223	chr5:151383539-151417923	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151404800-151407200	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr5:151405000-151407600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr5:151405200-151406200	Enhancers	Primary B cells from peripheral blood	blood
4	chr5:151405200-151407000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr5:151405200-151407000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr5:151405200-151407000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr5:151405200-151407000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr5:151405200-151407200	Enhancers	Primary T cells fromperipheralblood	blood
9	chr5:151405200-151407800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr5:151405400-151407000	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr5:151405600-151406600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
12	chr5:151405800-151406600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
13	chr5:151406000-151407200	Enhancers	Primary T killer memory cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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