Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10076374	0.96[EUR][1000 genomes]
rs13157757	0.93[EUR][1000 genomes]
rs2220621	0.93[EUR][1000 genomes]
rs59771425	0.85[EUR][1000 genomes]
rs60163815	0.82[EUR][1000 genomes]
rs60696888	0.93[EUR][1000 genomes]
rs61202049	0.82[EUR][1000 genomes]
rs62373366	0.85[EUR][1000 genomes]
rs62373367	0.85[EUR][1000 genomes]
rs62373368	0.85[EUR][1000 genomes]
rs62373384	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62373385	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62373387	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs62373389	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62373391	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62373392	0.93[EUR][1000 genomes]
rs62373412	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62373414	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6899200	0.82[EUR][1000 genomes]
rs7710810	0.93[EUR][1000 genomes]
rs7717300	0.96[EUR][1000 genomes]
rs7728701	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030992	chr5:124708549-125391503	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv537892	chr5:124708549-125391503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv882827	chr5:124867823-124943901	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv882828	chr5:124867823-124958205	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124872000-124885200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:124874400-124885000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:124876800-124885000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:124876800-124885200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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