Variant report

Variant	rs160036
Chromosome Location	chr5:151456198-151456199
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151455898..151457873-chr5:151461230..151462733,2	K562	blood:
2	chr5:151455699..151457769-chr5:151461152..151464254,4	MCF-7	breast:

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10075826	0.94[ASN][1000 genomes]
rs10477008	0.83[AFR][1000 genomes]
rs10477009	0.83[AFR][1000 genomes]
rs10515655	0.86[ASN][1000 genomes]
rs10515656	0.84[ASN][1000 genomes]
rs11956862	0.87[AFR][1000 genomes]
rs11959433	0.80[ASN][1000 genomes]
rs149570	0.85[ASN][1000 genomes]
rs150508	0.85[ASN][1000 genomes]
rs1508767	0.85[ASN][1000 genomes]
rs154102	0.82[ASN][1000 genomes]
rs154108	0.91[ASN][1000 genomes]
rs154694	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159495	0.85[ASN][1000 genomes]
rs159802	0.85[ASN][1000 genomes]
rs159819	0.85[ASN][1000 genomes]
rs159821	0.85[ASN][1000 genomes]
rs159822	0.84[ASN][1000 genomes]
rs160037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs160040	0.85[ASN][1000 genomes]
rs160041	0.85[ASN][1000 genomes]
rs1650908	0.85[ASN][1000 genomes]
rs1650909	0.85[ASN][1000 genomes]
rs166197	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1662206	0.85[ASN][1000 genomes]
rs1662207	0.85[ASN][1000 genomes]
rs1662208	0.85[ASN][1000 genomes]
rs167221	0.85[ASN][1000 genomes]
rs17112702	0.91[ASN][1000 genomes]
rs17662569	0.94[ASN][1000 genomes]
rs17742249	0.86[ASN][1000 genomes]
rs17742283	0.88[ASN][1000 genomes]
rs17742331	0.87[ASN][1000 genomes]
rs17742343	0.88[ASN][1000 genomes]
rs17742440	0.88[ASN][1000 genomes]
rs177439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17804556	0.88[ASN][1000 genomes]
rs185252	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1896779	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs253723	0.91[ASN][1000 genomes]
rs253724	0.83[ASN][1000 genomes]
rs253726	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2562388	0.85[ASN][1000 genomes]
rs2584912	0.85[ASN][1000 genomes]
rs2584913	0.84[ASN][1000 genomes]
rs2584914	0.84[ASN][1000 genomes]
rs2599478	0.85[ASN][1000 genomes]
rs297453	0.84[ASN][1000 genomes]
rs297454	0.85[ASN][1000 genomes]
rs29849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs29851	0.92[ASN][1000 genomes]
rs29855	0.98[AFR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs29856	0.91[ASN][1000 genomes]
rs300669	0.85[ASN][1000 genomes]
rs300670	0.85[ASN][1000 genomes]
rs303989	0.85[ASN][1000 genomes]
rs303990	0.85[ASN][1000 genomes]
rs303991	0.85[ASN][1000 genomes]
rs34268622	0.81[AFR][1000 genomes]
rs3852201	0.88[ASN][1000 genomes]
rs3909851	0.88[ASN][1000 genomes]
rs3909854	0.88[ASN][1000 genomes]
rs3909856	0.94[ASN][1000 genomes]
rs39806	0.98[AFR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs440768	0.91[ASN][1000 genomes]
rs471407	0.85[ASN][1000 genomes]
rs475253	0.85[ASN][1000 genomes]
rs482564	0.85[ASN][1000 genomes]
rs485313	0.85[ASN][1000 genomes]
rs487470	0.85[ASN][1000 genomes]
rs488335	0.85[ASN][1000 genomes]
rs489145	0.85[ASN][1000 genomes]
rs494362	0.85[ASN][1000 genomes]
rs4958292	0.85[ASN][1000 genomes]
rs499767	0.85[ASN][1000 genomes]
rs511292	0.85[ASN][1000 genomes]
rs513050	0.84[ASN][1000 genomes]
rs514032	0.85[ASN][1000 genomes]
rs515833	0.85[ASN][1000 genomes]
rs516675	0.85[ASN][1000 genomes]
rs523609	0.85[ASN][1000 genomes]
rs524587	0.85[ASN][1000 genomes]
rs524656	0.93[AFR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs526435	0.85[ASN][1000 genomes]
rs527312	0.85[ASN][1000 genomes]
rs529108	0.85[ASN][1000 genomes]
rs532857	0.85[ASN][1000 genomes]
rs534607	0.85[ASN][1000 genomes]
rs553933	0.85[ASN][1000 genomes]
rs556591	0.89[ASN][1000 genomes]
rs557546	0.85[ASN][1000 genomes]
rs577045	0.85[ASN][1000 genomes]
rs58240603	0.88[ASN][1000 genomes]
rs66860936	0.83[AFR][1000 genomes]
rs6878804	0.82[AFR][1000 genomes]
rs695205	0.85[ASN][1000 genomes]
rs72492470	0.85[ASN][1000 genomes]
rs72802282	0.86[ASN][1000 genomes]
rs72802285	0.88[ASN][1000 genomes]
rs72802288	0.88[ASN][1000 genomes]
rs7730910	0.86[AFR][1000 genomes]
rs804966	0.86[ASN][1000 genomes]
rs891164	0.85[ASN][1000 genomes]
rs9324718	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020899	chr5:151412785-151516788	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv5071	chr5:151438330-151472013	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv508384	chr5:151438582-151487326	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1004413	chr5:151454173-151462891	Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv435816	chr5:151455702-151462573	Enhancers Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2444052	chr5:151455919-151463221	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3372380	chr5:151455937-151462874	Active TSS Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3498029	chr5:151456006-151463038	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3334997	chr5:151456109-151463407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv7890	chr5:151456167-151462686	Active TSS Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151455400-151456200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:151456000-151456200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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