Variant report

Variant	rs1602030
Chromosome Location	chr12:87305532-87305533
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10128765	0.84[ASN][1000 genomes]
rs10506937	0.88[ASN][1000 genomes]
rs10506938	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10777013	0.95[ASN][1000 genomes]
rs10858519	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10858520	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10858521	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10858522	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10858531	0.86[ASN][1000 genomes]
rs10858532	0.85[ASN][1000 genomes]
rs10858533	0.95[ASN][1000 genomes]
rs10858534	0.93[ASN][1000 genomes]
rs11104181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11104182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11104183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11104184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11104186	0.89[ASN][1000 genomes]
rs11104200	0.95[ASN][1000 genomes]
rs11104201	0.95[ASN][1000 genomes]
rs11104202	0.94[ASN][1000 genomes]
rs11104204	0.95[ASN][1000 genomes]
rs11104206	0.87[ASN][1000 genomes]
rs11104208	0.93[ASN][1000 genomes]
rs11104210	0.94[ASN][1000 genomes]
rs11104211	0.94[ASN][1000 genomes]
rs11503302	0.85[ASN][1000 genomes]
rs11608485	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11612410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11612847	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12298287	0.94[ASN][1000 genomes]
rs12298747	0.95[ASN][1000 genomes]
rs12300511	0.94[ASN][1000 genomes]
rs12304615	0.95[ASN][1000 genomes]
rs12305874	0.95[ASN][1000 genomes]
rs12311623	0.84[ASN][1000 genomes]
rs12311807	0.95[ASN][1000 genomes]
rs12313182	0.89[ASN][1000 genomes]
rs12320339	0.83[ASN][1000 genomes]
rs12422318	0.84[ASN][1000 genomes]
rs12422525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12422526	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12424503	0.88[ASN][1000 genomes]
rs12425718	0.94[ASN][1000 genomes]
rs12426364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12426712	0.83[ASN][1000 genomes]
rs12811281	0.84[ASN][1000 genomes]
rs12813595	0.94[ASN][1000 genomes]
rs12817472	0.84[ASN][1000 genomes]
rs12825152	0.83[ASN][1000 genomes]
rs1352548	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1387401	0.93[ASN][1000 genomes]
rs1489339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1489340	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1489342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1489344	0.94[ASN][1000 genomes]
rs1489345	0.87[ASN][1000 genomes]
rs1586594	0.84[ASN][1000 genomes]
rs1602028	0.94[ASN][1000 genomes]
rs1602029	0.94[ASN][1000 genomes]
rs1873153	0.93[ASN][1000 genomes]
rs1873154	0.93[ASN][1000 genomes]
rs1906785	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1922750	0.94[ASN][1000 genomes]
rs1922752	0.84[ASN][1000 genomes]
rs1994537	0.84[ASN][1000 genomes]
rs2018963	0.84[ASN][1000 genomes]
rs2029392	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130175	0.95[ASN][1000 genomes]
rs2406393	0.81[ASN][1000 genomes]
rs2406396	0.84[ASN][1000 genomes]
rs28811636	0.81[ASN][1000 genomes]
rs2897395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34098787	0.94[ASN][1000 genomes]
rs35395565	0.83[ASN][1000 genomes]
rs35531102	0.91[ASN][1000 genomes]
rs59413136	0.83[ASN][1000 genomes]
rs59813133	0.89[ASN][1000 genomes]
rs66513214	0.94[ASN][1000 genomes]
rs66604050	0.86[ASN][1000 genomes]
rs66612020	0.92[ASN][1000 genomes]
rs67375948	0.94[ASN][1000 genomes]
rs67983610	0.95[ASN][1000 genomes]
rs68073390	0.95[ASN][1000 genomes]
rs71452165	0.84[ASN][1000 genomes]
rs73399861	0.84[ASN][1000 genomes]
rs7358611	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9804925	0.84[ASN][1000 genomes]
rs9805065	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv899397	chr12:86863041-87636831	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1049580	chr12:86966497-87354132	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv868879	chr12:87207243-87578373	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv559693	chr12:87216285-87447757	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1049688	chr12:87219949-87412043	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1052693	chr12:87219949-87573582	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv899403	chr12:87225050-87528020	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv2753551	chr12:87226774-87473947	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv899405	chr12:87233995-87430209	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv899406	chr12:87233995-87528020	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv428596	chr12:87244257-87422246	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv470312	chr12:87248804-87319908	Enhancers ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
15	nsv899407	chr12:87254691-87506910	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	esv2752961	chr12:87255339-87465826	ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
17	esv2754599	chr12:87255339-87491053	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
18	esv2755612	chr12:87260646-87460465	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
19	esv2755080	chr12:87260646-87465826	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	nsv559696	chr12:87274871-87374984	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
21	esv2754967	chr12:87281456-87491053	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87299600-87305800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:87305400-87307200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

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