Variant report

Variant	rs1603986
Chromosome Location	chr3:25148811-25148812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1587426	0.89[ASN][1000 genomes]
rs1603983	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1603984	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1603985	1.00[ASN][1000 genomes]
rs34850898	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4858705	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6550949	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6550950	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66831722	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6763490	0.81[EUR][1000 genomes]
rs6778399	0.80[EUR][1000 genomes]
rs7622091	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9826164	0.86[ASN][1000 genomes]
rs9877729	0.81[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1603986	LRRC3B	cis	parietal	SCAN
rs1603986	TOP2B	cis	parietal	SCAN
rs1603986	TOP2B	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25147600-25152200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:25147800-25157600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:25148600-25149600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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