Variant report

Variant	rs1606434
Chromosome Location	chr3:145955736-145955737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10222588	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10737947	0.91[ASN][1000 genomes]
rs10804709	0.86[ASN][1000 genomes]
rs10804710	0.91[ASN][1000 genomes]
rs10935611	0.86[ASN][1000 genomes]
rs10935613	0.91[ASN][1000 genomes]
rs10935614	0.91[ASN][1000 genomes]
rs10935615	0.91[ASN][1000 genomes]
rs10935616	0.91[ASN][1000 genomes]
rs11709096	0.91[ASN][1000 genomes]
rs11716310	0.84[ASN][1000 genomes]
rs11915448	0.91[ASN][1000 genomes]
rs11919011	0.91[ASN][1000 genomes]
rs11926517	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12487353	0.90[ASN][1000 genomes]
rs12632757	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12633074	0.90[ASN][1000 genomes]
rs1398122	0.82[EUR][1000 genomes]
rs1398529	0.86[ASN][1000 genomes]
rs1512078	0.91[ASN][1000 genomes]
rs1512079	0.91[ASN][1000 genomes]
rs1512080	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512081	0.90[ASN][1000 genomes]
rs1512888	0.84[ASN][1000 genomes]
rs1512890	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1512893	0.83[ASN][1000 genomes]
rs1877511	0.91[ASN][1000 genomes]
rs1913184	0.84[ASN][1000 genomes]
rs2036980	0.84[ASN][1000 genomes]
rs2175544	0.90[ASN][1000 genomes]
rs2175545	0.90[ASN][1000 genomes]
rs2867081	0.91[ASN][1000 genomes]
rs2867082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2867083	0.91[ASN][1000 genomes]
rs2867084	0.89[ASN][1000 genomes]
rs2903478	0.84[ASN][1000 genomes]
rs2903479	0.91[ASN][1000 genomes]
rs3762686	0.84[ASN][1000 genomes]
rs3762688	0.84[ASN][1000 genomes]
rs3792338	0.84[ASN][1000 genomes]
rs3804648	0.84[ASN][1000 genomes]
rs3804654	0.84[ASN][1000 genomes]
rs3914252	0.84[ASN][1000 genomes]
rs4273339	0.91[ASN][1000 genomes]
rs4475004	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4488802	0.91[ASN][1000 genomes]
rs4610193	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4681306	0.91[ASN][1000 genomes]
rs4681307	0.90[ASN][1000 genomes]
rs4681308	0.90[ASN][1000 genomes]
rs4681310	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6440421	0.86[ASN][1000 genomes]
rs6440422	0.91[ASN][1000 genomes]
rs6770057	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6770163	0.86[ASN][1000 genomes]
rs6770278	0.86[ASN][1000 genomes]
rs6792732	0.90[ASN][1000 genomes]
rs6805377	0.90[ASN][1000 genomes]
rs7430290	0.90[ASN][1000 genomes]
rs7612683	0.84[ASN][1000 genomes]
rs7621841	0.91[ASN][1000 genomes]
rs7632412	0.90[ASN][1000 genomes]
rs7633252	0.81[ASN][1000 genomes]
rs7634568	0.90[ASN][1000 genomes]
rs7643778	0.91[ASN][1000 genomes]
rs925464	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9289719	0.88[EUR][1000 genomes]
rs9756128	0.84[ASN][1000 genomes]
rs9809892	0.84[ASN][1000 genomes]
rs9813122	0.91[ASN][1000 genomes]
rs9822280	0.84[ASN][1000 genomes]
rs9825776	0.91[ASN][1000 genomes]
rs9826132	0.91[ASN][1000 genomes]
rs9826360	0.91[ASN][1000 genomes]
rs9826591	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9830892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9836419	1.00[ASN][1000 genomes]
rs9838801	0.86[ASN][1000 genomes]
rs9838866	0.90[ASN][1000 genomes]
rs9839724	0.84[ASN][1000 genomes]
rs9839874	0.84[ASN][1000 genomes]
rs9845890	0.91[ASN][1000 genomes]
rs9850566	0.84[ASN][1000 genomes]
rs9851511	0.91[ASN][1000 genomes]
rs9855695	0.90[ASN][1000 genomes]
rs9858823	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9859273	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9863647	0.90[ASN][1000 genomes]
rs9867851	0.91[ASN][1000 genomes]
rs9873891	1.00[ASN][1000 genomes]
rs9875799	0.90[ASN][1000 genomes]
rs9877004	0.84[ASN][1000 genomes]
rs9881755	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877614	chr3:145903426-146025896	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv877615	chr3:145910430-145988231	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv877616	chr3:145921954-145983688	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3333601	chr3:145940702-146068210	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3416330	chr3:145941029-146068457	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3452197	chr3:145950303-145974111	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	esv3333990	chr3:145950303-145982133	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145945200-145959800	Weak transcription	Ovary	ovary
2	chr3:145948000-145967800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:145952600-145956200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:145952800-145957200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:145953200-145968000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:145954600-145962600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:145954600-145967800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:145955200-145962400	Weak transcription	Fetal Lung	lung
9	chr3:145955400-145959400	Weak transcription	Muscle Satellite Cultured Cells	--

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