Variant report

Variant	rs1609403
Chromosome Location	chr3:34516403-34516404
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1191622	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1211518	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1317104	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1529072	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1881685	0.81[EUR][1000 genomes]
rs1919618	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1919619	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1919620	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2167040	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2218729	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2951002	0.81[EUR][1000 genomes]
rs35289126	0.83[ASN][1000 genomes]
rs35905703	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4678469	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6788612	0.83[ASN][1000 genomes]
rs6804250	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73058737	0.81[ASN][1000 genomes]
rs9311051	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9816663	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9836767	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9854604	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9861656	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9880774	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876683	chr3:34451940-34536095	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1007906	chr3:34466966-34607465	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3333833	chr3:34480997-34525040	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv876684	chr3:34502652-34566947	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34513600-34517200	Weak transcription	Thymus	Thymus

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