Variant report

Variant	rs1614197
Chromosome Location	chr18:29277419-29277420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10048377	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10775449	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11081707	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11081708	0.99[EUR][1000 genomes]
rs11660271	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11664177	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12327203	0.95[EUR][1000 genomes]
rs12605321	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12964693	0.99[EUR][1000 genomes]
rs1449082	0.97[EUR][1000 genomes]
rs1551000	0.90[ASN][1000 genomes]
rs34530749	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs718780	0.96[EUR][1000 genomes]
rs8092508	0.88[ASN][1000 genomes]
rs8098191	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs968325	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909519	chr18:29172865-29330214	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1059078	chr18:29225522-29454980	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv543675	chr18:29225522-29454980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29267200-29282600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr18:29276000-29277600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr18:29276200-29282400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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