Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1112039	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12205058	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1319623	0.80[AMR][1000 genomes]
rs1319624	0.83[AMR][1000 genomes]
rs1615828	0.84[AMR][1000 genomes]
rs1622964	0.81[AMR][1000 genomes]
rs1686317	0.84[AMR][1000 genomes]
rs1686318	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1760649	0.82[AMR][1000 genomes]
rs1760658	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1767853	0.82[AMR][1000 genomes]
rs1767861	0.82[AMR][1000 genomes]
rs2635103	0.80[AMR][1000 genomes]
rs2635111	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2635115	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2781175	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2781210	0.81[AMR][1000 genomes]
rs2788972	0.81[AMR][1000 genomes]
rs763672	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7758470	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7773856	0.85[EUR][1000 genomes]
rs9352088	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs9352089	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs9360767	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3327625	chr6:74716120-74971605	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv886162	chr6:74903797-75006170	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886163	chr6:74944460-75006170	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv886164	chr6:74944460-75024313	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74958000-74961400	Enhancers	HUVEC	blood vessel
2	chr6:74958800-74959600	Enhancers	HMEC	breast
3	chr6:74958800-74959800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:74958800-74960400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:74958800-74960800	Enhancers	NHEK	skin
6	chr6:74958800-74961400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:74959000-74959600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:74959000-74961200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:74959200-74961600	Enhancers	Fetal Intestine Large	intestine
10	chr6:74959400-74959600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:74959400-74960400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:74959400-74960600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:74959400-74961200	Weak transcription	Fetal Intestine Small	intestine

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