Variant report

Variant	rs1616318
Chromosome Location	chr7:138278913-138278914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:138277757..138279583-chr7:138282774..138285734,2	K562	blood:
2	chr7:138272442..138274593-chr7:138278540..138281503,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10155993	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs10215281	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs10227693	0.82[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs10232737	0.86[EUR][1000 genomes]
rs10247380	0.83[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs10248731	0.83[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs1077772	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs1116324	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11976614	0.83[CHB][hapmap];0.84[JPT][hapmap];0.92[MEX][hapmap]
rs12112459	0.81[EUR][1000 genomes]
rs12666310	0.83[ASN][1000 genomes]
rs1371463	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1421604	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs1544733	0.82[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs1614641	0.90[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1659830	0.95[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1659831	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1659832	0.95[CEU][hapmap];0.89[GIH][hapmap];0.96[MEX][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1673203	0.80[JPT][hapmap];0.82[ASN][1000 genomes]
rs1673204	0.90[CEU][hapmap];0.82[CHB][hapmap];0.82[GIH][hapmap];0.80[JPT][hapmap];0.91[MEX][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1673205	0.91[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs1673206	0.95[CEU][hapmap];0.86[CHB][hapmap];0.90[GIH][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1673207	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1673211	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17364560	0.90[CEU][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17461551	0.90[CEU][hapmap];0.81[AMR][1000 genomes]
rs1813003	0.82[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs1874326	0.84[JPT][hapmap]
rs2353354	0.85[CEU][hapmap];0.82[CHB][hapmap];0.83[MEX][hapmap];0.83[ASN][1000 genomes]
rs2353355	0.87[ASN][1000 genomes]
rs3778705	0.80[ASN][1000 genomes]
rs3807155	0.83[CHB][hapmap];0.84[JPT][hapmap];0.92[MEX][hapmap];0.82[ASN][1000 genomes]
rs3807156	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs3807157	0.89[CEU][hapmap];0.82[AMR][1000 genomes]
rs55723768	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56092804	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs57072133	0.85[EUR][1000 genomes]
rs57407834	0.81[EUR][1000 genomes]
rs58562866	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62485261	0.84[EUR][1000 genomes]
rs62485264	0.80[ASN][1000 genomes]
rs62487615	0.81[AMR][1000 genomes]
rs62487616	0.81[AMR][1000 genomes]
rs62487619	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6467778	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs6467780	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs6467782	0.83[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs6467783	0.83[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs6948094	0.84[ASN][1000 genomes]
rs6954285	0.83[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs6959574	0.83[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs6963539	0.85[CEU][hapmap];0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs728092	0.85[ASN][1000 genomes]
rs749546	0.90[CEU][hapmap];0.82[GIH][hapmap];0.88[MEX][hapmap]
rs7795981	0.80[EUR][1000 genomes]
rs963279	0.84[EUR][1000 genomes]
rs9791462	0.94[CEU][hapmap];0.81[CHB][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9791634	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs985299	0.83[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138272600-138280400	Weak transcription	Thymus	Thymus
2	chr7:138272600-138286200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr7:138273000-138284000	Weak transcription	Fetal Kidney	kidney
4	chr7:138273000-138285000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:138273000-138286200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr7:138273000-138286200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:138273600-138286800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:138278400-138279200	Enhancers	Fetal Intestine Large	intestine

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