Variant report

Variant	rs1620873
Chromosome Location	chr14:65676295-65676296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65670192..65672045-chr14:65675137..65676974,2	K562	blood:
2	chr14:65674009..65676655-chr14:65879335..65881090,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1679870	0.89[ASN][1000 genomes]
rs1679872	0.88[ASN][1000 genomes]
rs1679873	0.87[ASN][1000 genomes]
rs1679874	0.80[ASN][1000 genomes]
rs1679875	0.86[ASN][1000 genomes]
rs1679879	0.88[ASN][1000 genomes]
rs1679881	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1760956	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1760983	0.87[ASN][1000 genomes]
rs1760984	0.87[ASN][1000 genomes]
rs1760985	0.86[ASN][1000 genomes]
rs2622638	0.88[ASN][1000 genomes]
rs6573593	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv564932	chr14:65660502-65691545	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv564933	chr14:65667546-65710580	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65670200-65678400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:65671000-65677400	Enhancers	Fetal Thymus	thymus
3	chr14:65671600-65678800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr14:65671800-65678600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr14:65671800-65678800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr14:65672000-65678400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr14:65672200-65681400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:65672800-65691400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:65673600-65677200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr14:65673800-65676400	Weak transcription	HSMM	muscle
11	chr14:65673800-65676600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr14:65673800-65676800	Weak transcription	HMEC	breast
13	chr14:65673800-65677000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr14:65673800-65677000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr14:65673800-65677000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr14:65673800-65677000	Weak transcription	NHDF-Ad	bronchial
17	chr14:65673800-65677000	Weak transcription	NHEK	skin
18	chr14:65673800-65677000	Weak transcription	NHLF	lung
19	chr14:65673800-65677200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr14:65674000-65676600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr14:65674000-65676800	Weak transcription	Osteobl	bone
22	chr14:65674000-65677000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr14:65674000-65677000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr14:65674000-65677000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr14:65674000-65678800	Enhancers	Primary B cells from peripheral blood	blood
26	chr14:65674000-65678800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr14:65674000-65680000	Enhancers	Dnd41	blood
28	chr14:65674000-65691400	Weak transcription	Thymus	Thymus
29	chr14:65674200-65676400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr14:65674200-65676800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr14:65674200-65676800	Weak transcription	NH-A	brain
32	chr14:65674200-65677000	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr14:65674200-65678600	Enhancers	Primary B cells from cord blood	blood
34	chr14:65674400-65677000	Enhancers	GM12878-XiMat	blood
35	chr14:65674600-65677000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr14:65674800-65677400	Enhancers	K562	blood
37	chr14:65675200-65676800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr14:65675200-65677000	Weak transcription	Brain Hippocampus Middle	brain
39	chr14:65675200-65677200	Weak transcription	HepG2	liver
40	chr14:65675200-65677400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr14:65675200-65678600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr14:65675400-65676600	Weak transcription	Primary T cells from cord blood	blood
43	chr14:65675400-65678600	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr14:65675400-65678600	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr14:65675600-65676800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr14:65675600-65676800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr14:65675600-65677000	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr14:65675600-65677400	Weak transcription	Stomach Mucosa	stomach
49	chr14:65675600-65678600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
50	chr14:65675600-65680800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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