Variant report

Variant	rs1625926
Chromosome Location	chr1:61467636-61467637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1621920	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1694216	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17121533	0.81[EUR][1000 genomes]
rs17376392	0.83[EUR][1000 genomes]
rs4915585	0.81[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1625926	DYRK1A	trans	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61456400-61471400	Weak transcription	Fetal Brain Female	brain
2	chr1:61458200-61477600	Weak transcription	Left Ventricle	heart
3	chr1:61460800-61469800	Weak transcription	K562	blood
4	chr1:61464800-61468600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:61466000-61470000	Weak transcription	Placenta	Placenta
6	chr1:61466200-61470000	Weak transcription	Brain Germinal Matrix	brain
7	chr1:61466600-61468600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr1:61466600-61468600	Weak transcription	Psoas Muscle	Psoas
9	chr1:61466600-61470000	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:61466600-61478800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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