Variant report

Variant	rs1626413
Chromosome Location	chr18:28699514-28699515
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:28692982..28695806-chr18:28698647..28700392,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12960042	0.81[ASN][1000 genomes]
rs1437604	0.82[EUR][1000 genomes]
rs1595358	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1626700	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1658108	0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs1658110	0.95[CHB][hapmap];0.96[JPT][hapmap];0.97[ASN][1000 genomes]
rs1658111	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1658112	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1658130	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1658135	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17800159	0.95[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs1789036	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1789043	0.95[CHB][hapmap];0.96[JPT][hapmap];0.97[ASN][1000 genomes]
rs1789072	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1790669	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1790670	0.93[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1790671	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1790673	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1790674	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1790675	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1790691	0.99[ASN][1000 genomes]
rs1790706	0.93[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs2243907	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2577079	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2577081	1.00[ASN][1000 genomes]
rs4799563	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4799564	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4799565	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530788	chr18:28596461-28751891	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv130642	chr18:28696273-28701122	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28698600-28699600	Enhancers	H9 Cell Line	embryonic stem cell
2	chr18:28698600-28699800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr18:28698800-28699600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr18:28698800-28700000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr18:28699000-28699600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr18:28699000-28699600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr18:28699000-28699800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr18:28699200-28699600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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