Variant report

Variant	rs162675
Chromosome Location	chr5:97991394-97991395
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs149247	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs150822	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs152980	0.93[ASN][1000 genomes]
rs152981	0.98[ASN][1000 genomes]
rs152982	0.98[ASN][1000 genomes]
rs152983	0.97[ASN][1000 genomes]
rs152986	0.99[ASN][1000 genomes]
rs152987	0.99[ASN][1000 genomes]
rs152990	0.99[ASN][1000 genomes]
rs159162	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1592853	0.89[EUR][1000 genomes]
rs160710	0.94[EUR][1000 genomes]
rs160711	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs160713	0.90[EUR][1000 genomes]
rs160714	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs160716	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs160720	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs162674	0.85[ASN][1000 genomes]
rs176892	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs184143	0.95[EUR][1000 genomes]
rs2112421	0.89[EUR][1000 genomes]
rs2545670	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2545692	0.88[EUR][1000 genomes]
rs2547957	0.89[EUR][1000 genomes]
rs2662244	0.84[EUR][1000 genomes]
rs294030	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs29671	0.99[ASN][1000 genomes]
rs29770	0.93[CEU][hapmap];0.90[GIH][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap]
rs29772	0.93[CEU][hapmap];0.90[GIH][hapmap];0.82[JPT][hapmap];0.82[TSI][hapmap]
rs316506	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs316508	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs316510	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs373070	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs384863	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs392132	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs403888	0.93[EUR][1000 genomes]
rs408005	0.91[EUR][1000 genomes]
rs408400	0.93[EUR][1000 genomes]
rs423108	0.86[EUR][1000 genomes]
rs426515	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs439509	0.90[EUR][1000 genomes]
rs442074	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs455749	0.93[EUR][1000 genomes]
rs455800	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs456244	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs456367	0.93[EUR][1000 genomes]
rs457215	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs458154	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs459865	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs460295	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs461258	0.93[EUR][1000 genomes]
rs461548	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs462719	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs463309	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs463872	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs464246	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs465003	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs465427	0.93[EUR][1000 genomes]
rs67595117	0.88[EUR][1000 genomes]
rs981567	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882413	chr5:97918829-98022320	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv4929	chr5:97988331-98005486	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97990200-97991600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:97991000-97995400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:97991200-97995600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links