Variant report

Variant	rs162862
Chromosome Location	chr5:16530899-16530900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:16529119..16532127-chr5:16532204..16536269,4	MCF-7	breast:
2	chr5:16529383..16532195-chr5:16534622..16538676,4	MCF-7	breast:
3	chr5:16527438..16530351-chr5:16530397..16531960,2	K562	blood:
4	chr5:16517107..16520013-chr5:16530659..16532306,2	MCF-7	breast:
5	chr5:16519929..16521651-chr5:16530400..16531956,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10053236	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1020952	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12109050	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1240951	0.85[EUR][1000 genomes]
rs1240952	0.82[EUR][1000 genomes]
rs1551936	0.82[AFR][1000 genomes]
rs162758	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1991468	0.82[AFR][1000 genomes]
rs248132	0.81[EUR][1000 genomes]
rs248133	0.81[EUR][1000 genomes]
rs334470	0.80[EUR][1000 genomes]
rs334473	0.81[EUR][1000 genomes]
rs334485	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs334486	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs334487	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs334490	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs334491	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs334492	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs425779	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs595358	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6858960	0.82[AFR][1000 genomes]
rs899186	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881187	chr5:16514269-16654960	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16516000-16540800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr5:16519800-16531400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr5:16521600-16539600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:16522400-16567400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr5:16523400-16540800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr5:16523600-16533800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr5:16523600-16535400	Weak transcription	Pancreas	Pancrea
8	chr5:16523800-16539000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:16523800-16540800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr5:16524600-16531800	Weak transcription	Small Intestine	intestine
11	chr5:16524600-16533800	Weak transcription	Right Ventricle	heart
12	chr5:16525000-16540800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr5:16525000-16542000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr5:16525200-16540400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr5:16525600-16539200	Weak transcription	Gastric	stomach
16	chr5:16526400-16537400	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr5:16527200-16533800	Weak transcription	Primary T cells from cord blood	blood
18	chr5:16527200-16534400	Weak transcription	Thymus	Thymus
19	chr5:16528600-16532000	Enhancers	Fetal Intestine Large	intestine
20	chr5:16528600-16532000	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr5:16528600-16532200	Enhancers	Fetal Intestine Small	intestine
22	chr5:16528600-16532800	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr5:16529000-16537000	Weak transcription	Fetal Brain Male	brain
24	chr5:16529000-16538000	Weak transcription	Fetal Brain Female	brain
25	chr5:16529800-16532200	Enhancers	Pancreatic Islets	Pancreatic Islet
26	chr5:16530000-16531200	Weak transcription	Stomach Mucosa	stomach
27	chr5:16530000-16531400	Weak transcription	Brain Anterior Caudate	brain
28	chr5:16530200-16531600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr5:16530200-16531600	Weak transcription	Brain Angular Gyrus	brain
30	chr5:16530200-16532000	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr5:16530200-16532400	Enhancers	Duodenum Mucosa	Duodenum
32	chr5:16530400-16531400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr5:16530400-16531400	Weak transcription	Brain Substantia Nigra	brain
34	chr5:16530400-16531600	Weak transcription	Brain Hippocampus Middle	brain
35	chr5:16530400-16531600	Weak transcription	Colonic Mucosa	Colon
36	chr5:16530400-16531600	Weak transcription	Fetal Muscle Leg	muscle
37	chr5:16530400-16531600	Weak transcription	Left Ventricle	heart
38	chr5:16530400-16531600	Weak transcription	Psoas Muscle	Psoas
39	chr5:16530400-16531600	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr5:16530400-16535400	Weak transcription	Right Atrium	heart
41	chr5:16530600-16531000	Weak transcription	Fetal Heart	heart
42	chr5:16530600-16531000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr5:16530600-16535400	Weak transcription	Fetal Muscle Trunk	muscle
44	chr5:16530800-16531200	Weak transcription	Brain Inferior Temporal Lobe	brain

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