Variant report
| Variant | rs1632332 |
|---|---|
| Chromosome Location | chr11:56643508-56643509 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:4)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:56640294..56642115-chr11:56642674..56646805,4 | K562 | blood: |
(count:4 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-OR5AK2-1 | chr11:56643073-56645554 | XLOC_009132 |
| 2 | lnc-OR5AK2-1 | chr11:56643073-56644687 | ENSG00000255433 |
| 3 | lnc-OR5AK2-1 | chr11:56643073-56645554 | ENSG00000255433 |
| 4 | lnc-OR5AK2-1 | chr11:56643073-56645554 | NR_110136 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11828859 | 1.00[JPT][hapmap] |
| rs12419314 | 0.95[ASN][1000 genomes] |
| rs12421316 | 1.00[JPT][hapmap] |
| rs1613887 | 0.97[ASN][1000 genomes] |
| rs1783444 | 0.97[ASN][1000 genomes] |
| rs1783445 | 0.97[ASN][1000 genomes] |
| rs1783446 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1783447 | 0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1783450 | 0.95[ASN][1000 genomes] |
| rs1783451 | 0.97[ASN][1000 genomes] |
| rs1783459 | 0.96[ASN][1000 genomes] |
| rs1783465 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1792494 | 0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1792495 | 0.97[ASN][1000 genomes] |
| rs1792496 | 0.97[ASN][1000 genomes] |
| rs1792498 | 0.97[ASN][1000 genomes] |
| rs1792499 | 0.97[ASN][1000 genomes] |
| rs1792500 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1892787 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1938751 | 0.95[ASN][1000 genomes] |
| rs2226850 | 0.95[ASN][1000 genomes] |
| rs2226851 | 0.95[ASN][1000 genomes] |
| rs2374 | 0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4939095 | 0.95[ASN][1000 genomes] |
| rs4939097 | 0.95[ASN][1000 genomes] |
| rs523098 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs56210588 | 0.95[ASN][1000 genomes] |
| rs7930832 | 0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1048328 | chr11:56471984-56649908 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | esv2830406 | chr11:56481955-56650124 | Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv468577 | chr11:56503728-56704042 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv555101 | chr11:56503728-56704042 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 9 gene(s) | inside rSNPs | diseases |
| 5 | nsv469960 | chr11:56605222-56704042 | Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv1045889 | chr11:56624365-56737435 | Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:56640000-56644000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr11:56642000-56645200 | Enhancers | Stomach Mucosa | stomach |
| 3 | chr11:56642800-56646000 | Weak transcription | Fetal Intestine Small | intestine |
| 4 | chr11:56643200-56644400 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
