Variant report

Variant	rs163449
Chromosome Location	chr5:111868673-111868674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:111496398..111498686-chr5:111868058..111870036,2	MCF-7	breast:
2	chr5:111868244..111870833-chr5:111871300..111873976,2	K562	blood:
3	chr5:111868244..111870833-chr5:111871300..111873976,3	K562	blood:

Variant related genes	Relation type
ENSG00000238363	Chromatin interaction
ENSG00000224032	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11749928	0.85[AFR][1000 genomes]
rs11951455	0.86[AFR][1000 genomes]
rs163451	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs163452	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs163453	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs189296	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs255703	0.83[EUR][1000 genomes]
rs255706	0.84[EUR][1000 genomes]
rs338845	0.85[ASN][1000 genomes]
rs338847	0.85[ASN][1000 genomes]
rs338855	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs338857	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs424258	0.82[ASN][1000 genomes]
rs56317607	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv882715	chr5:111836278-111894491	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
3	nsv882716	chr5:111848890-111894491	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111865600-111869000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:111865600-111869800	Weak transcription	K562	blood
3	chr5:111867800-111870800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:111868000-111868800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr5:111868000-111869600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr5:111868000-111870400	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr5:111868200-111869400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr5:111868200-111869600	Enhancers	H9 Cell Line	embryonic stem cell
9	chr5:111868200-111869800	Enhancers	Primary B cells from cord blood	blood
10	chr5:111868200-111870000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr5:111868200-111870200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr5:111868400-111869000	Enhancers	Primary T cells from cord blood	blood
13	chr5:111868400-111869600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr5:111868400-111869600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr5:111868400-111870200	Enhancers	Spleen	Spleen
16	chr5:111868400-111870400	Enhancers	Adipose Nuclei	Adipose
17	chr5:111868600-111869000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr5:111868600-111869000	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr5:111868600-111869400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr5:111868600-111869400	Flanking Active TSS	GM12878-XiMat	blood
21	chr5:111868600-111871200	Enhancers	Primary B cells from peripheral blood	blood

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