Variant report

Variant	rs163453
Chromosome Location	chr5:111870324-111870325
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11951455	0.80[AFR][1000 genomes]
rs163449	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs163451	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs163452	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs189296	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255706	0.81[EUR][1000 genomes]
rs338845	0.82[ASN][1000 genomes]
rs338847	0.82[ASN][1000 genomes]
rs338855	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs338857	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs424258	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv882715	chr5:111836278-111894491	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
3	nsv882716	chr5:111848890-111894491	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111867800-111870800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr5:111868000-111870400	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr5:111868400-111870400	Enhancers	Adipose Nuclei	Adipose
4	chr5:111868600-111871200	Enhancers	Primary B cells from peripheral blood	blood
5	chr5:111868800-111871200	Enhancers	Stomach Mucosa	stomach
6	chr5:111869400-111870400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:111869400-111870400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:111869400-111871000	Enhancers	GM12878-XiMat	blood
9	chr5:111869600-111871600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr5:111869600-111880000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:111869800-111871600	Enhancers	K562	blood
12	chr5:111870000-111870400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr5:111870000-111870600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr5:111870000-111871000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr5:111870000-111874400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr5:111870000-111874800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links