Variant report

Variant	rs163456
Chromosome Location	chr5:111871336-111871337
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:111871115..111873160-chr5:111927827..111929771,2	K562	blood:
2	chr5:111868244..111870833-chr5:111871300..111873976,3	K562	blood:
3	chr5:111868244..111870833-chr5:111871300..111873976,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11740414	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11745418	0.96[CEU][hapmap];0.82[GIH][hapmap];0.91[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11748780	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1422541	1.00[CEU][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1445934	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1445935	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs338842	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs338843	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs338850	0.86[EUR][1000 genomes]
rs338854	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs338863	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs338864	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs338867	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs338869	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs338873	1.00[CEU][hapmap]
rs341289	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs341290	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs401722	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs430143	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs437318	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4376316	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs445130	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4574588	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7443518	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv882715	chr5:111836278-111894491	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
3	nsv882716	chr5:111848890-111894491	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111869600-111871600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr5:111869600-111880000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:111869800-111871600	Enhancers	K562	blood
4	chr5:111870000-111874400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:111870000-111874800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:111871200-111872400	Weak transcription	Primary B cells from peripheral blood	blood

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