Variant report

Variant	rs1638670
Chromosome Location	chr10:119154977-119154978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1638667	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1772810	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2487694	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs363241	0.82[CEU][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1638670	PDZD8	cis	Whole Blood	GTEx
rs1638670	SLC18A2	Cis_1M	lymphoblastoid	RTeQTL
rs1638670	PDZD8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119151600-119158800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:119151800-119164400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:119152600-119155400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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