Variant report

Variant	rs1641623
Chromosome Location	chr12:11713476-11713477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10491980	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11054355	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11054420	1.00[EUR][1000 genomes]
rs12296206	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12297330	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12304175	1.00[JPT][hapmap]
rs12306671	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12312814	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12318942	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16934780	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16934824	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16935059	1.00[ASN][1000 genomes]
rs16935084	1.00[ASN][1000 genomes]
rs1795551	1.00[JPT][hapmap]
rs55959071	1.00[EUR][1000 genomes]
rs56717408	1.00[ASN][1000 genomes]
rs58160049	1.00[EUR][1000 genomes]
rs59624591	1.00[EUR][1000 genomes]
rs59692713	1.00[EUR][1000 genomes]
rs60499077	1.00[EUR][1000 genomes]
rs61366849	1.00[EUR][1000 genomes]
rs7294334	1.00[EUR][1000 genomes]
rs7305726	1.00[EUR][1000 genomes]
rs7306490	1.00[EUR][1000 genomes]
rs7308344	1.00[EUR][1000 genomes]
rs7316082	1.00[ASN][1000 genomes]
rs73286612	1.00[ASN][1000 genomes]
rs73288732	1.00[EUR][1000 genomes]
rs73288733	1.00[EUR][1000 genomes]
rs73288736	1.00[EUR][1000 genomes]
rs73288738	1.00[EUR][1000 genomes]
rs73288740	1.00[EUR][1000 genomes]
rs73288746	1.00[EUR][1000 genomes]
rs73288748	1.00[EUR][1000 genomes]
rs73288753	1.00[EUR][1000 genomes]
rs73288756	1.00[EUR][1000 genomes]
rs73288757	1.00[EUR][1000 genomes]
rs73288764	1.00[EUR][1000 genomes]
rs74060969	1.00[EUR][1000 genomes]
rs74061000	1.00[EUR][1000 genomes]
rs74062355	1.00[EUR][1000 genomes]
rs74062357	1.00[EUR][1000 genomes]
rs74062364	1.00[EUR][1000 genomes]
rs7972959	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7975230	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7975331	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758294	chr12:10969620-11714921	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv2759879	chr12:10969620-11714921	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
3	nsv428272	chr12:11069845-11714921	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11709800-11714200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr12:11710000-11714200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr12:11710000-11714600	Weak transcription	Colon Smooth Muscle	Colon
4	chr12:11710200-11713800	Weak transcription	Aorta	Aorta
5	chr12:11713000-11713600	Weak transcription	GM12878-XiMat	blood

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