The 2.0 version of rSNPBase

Variant report

Variant rs1650053
Chromosome Location chr12:11328778-11328779
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:11325000-11335600 Weak transcription Left Ventricle heart
2 chr12:11325200-11330000 Weak transcription Primary T cells fromperipheralblood blood
3 chr12:11325200-11330400 Weak transcription Skeletal Muscle Female skeletal muscle
4 chr12:11325200-11332200 Weak transcription Fetal Muscle Leg muscle
5 chr12:11325200-11332200 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr12:11325400-11331400 Weak transcription Psoas Muscle Psoas
7 chr12:11325400-11331800 Weak transcription Monocytes-CD14+_RO01746 blood
8 chr12:11325400-11332000 Weak transcription Primary T regulatory cells fromperipheralblood blood
9 chr12:11325600-11328800 Weak transcription Fetal Intestine Large intestine
10 chr12:11325600-11329000 Weak transcription Primary monocytes fromperipheralblood blood
11 chr12:11325600-11330000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
12 chr12:11325600-11331400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
13 chr12:11325600-11332200 Weak transcription Brain Germinal Matrix brain
14 chr12:11325600-11334400 Weak transcription Primary B cells from cord blood blood
15 chr12:11325600-11338200 Weak transcription Primary B cells from peripheral blood blood
16 chr12:11325800-11329000 Strong transcription Primary hematopoietic stem cells short term culture blood
17 chr12:11325800-11329600 Weak transcription ES-I3 Cell Line embryonic stem cell
18 chr12:11326000-11328800 Weak transcription Muscle Satellite Cultured Cells --
19 chr12:11326000-11329000 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr12:11326000-11330000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr12:11326000-11330400 Weak transcription Primary T helper naive cells from peripheral blood blood
22 chr12:11326000-11330400 Weak transcription Fetal Lung lung
23 chr12:11326000-11330800 Weak transcription HUVEC blood vessel
24 chr12:11326000-11331000 Weak transcription Primary T helper naive cells fromperipheralblood blood
25 chr12:11326000-11331800 Weak transcription Primary T killer naive cells fromperipheralblood blood
26 chr12:11326000-11334400 Weak transcription Cortex derived primary cultured neurospheres brain
27 chr12:11326200-11328800 Weak transcription Ovary ovary
28 chr12:11326200-11329200 Weak transcription Fetal Brain Female brain
29 chr12:11326200-11331400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr12:11326200-11331400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
31 chr12:11326200-11331600 Weak transcription HMEC breast
32 chr12:11326200-11331800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr12:11326200-11334600 Weak transcription Liver Liver
34 chr12:11326200-11338600 Weak transcription Fetal Adrenal Gland Adrenal Gland
35 chr12:11326400-11328800 Weak transcription GM12878-XiMat blood
36 chr12:11326400-11329000 Weak transcription Fetal Kidney kidney
37 chr12:11326400-11329800 Weak transcription A549 lung
38 chr12:11326400-11330000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
39 chr12:11326400-11332000 Weak transcription NHEK skin
40 chr12:11326400-11334400 Weak transcription Fetal Thymus thymus
41 chr12:11326400-11337400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
42 chr12:11326400-11355600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
43 chr12:11327200-11328800 Weak transcription HSMM muscle
44 chr12:11327400-11330800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
45 chr12:11328000-11329200 Strong transcription Primary hematopoietic stem cells blood
46 chr12:11328000-11330600 Strong transcription Primary T cells from cord blood blood
47 chr12:11328000-11338600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
48 chr12:11328200-11328800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr12:11328400-11330000 Weak transcription Stomach Smooth Muscle stomach
50 chr12:11328400-11330000 Weak transcription Dnd41 blood

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Last update: Aug 31, 2015