Variant report

Variant	rs1659832
Chromosome Location	chr7:138281355-138281356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:138274752..138276907-chr7:138280390..138282735,2	K562	blood:
2	chr7:138267411..138269686-chr7:138280392..138282510,2	K562	blood:
3	chr7:138272442..138274593-chr7:138278540..138281503,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1116324	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11976614	0.88[MEX][hapmap]
rs12112459	0.80[AMR][1000 genomes]
rs12666310	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1371463	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1614641	0.95[CEU][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1616318	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1659830	0.89[CEU][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1659831	0.90[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1673204	0.95[CEU][hapmap];0.86[GIH][hapmap];0.96[MEX][hapmap];0.81[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1673206	0.89[CEU][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.82[AMR][1000 genomes]
rs1673207	0.80[AMR][1000 genomes]
rs1673211	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17364560	0.84[CEU][hapmap];0.84[AMR][1000 genomes]
rs17461551	0.84[CEU][hapmap]
rs2353354	0.89[CEU][hapmap];0.81[GIH][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3807155	0.88[MEX][hapmap]
rs3807157	0.83[CEU][hapmap]
rs57407834	0.80[AMR][1000 genomes]
rs62485261	0.80[AMR][1000 genomes]
rs62485263	0.80[EUR][1000 genomes]
rs62485264	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6974877	0.80[AMR][1000 genomes]
rs728092	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs749546	0.82[ASW][hapmap];0.84[CEU][hapmap];0.86[GIH][hapmap];0.84[MEX][hapmap]
rs9791462	0.88[CEU][hapmap];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138272600-138286200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:138273000-138284000	Weak transcription	Fetal Kidney	kidney
3	chr7:138273000-138285000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:138273000-138286200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr7:138273000-138286200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:138273600-138286800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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