Variant report

Variant	rs1663251
Chromosome Location	chr15:58501481-58501482
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1618701	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1663252	0.84[CEU][hapmap];0.91[MEX][hapmap];0.81[EUR][1000 genomes]
rs1663253	0.86[ASW][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1663257	0.81[CEU][hapmap];0.90[MEX][hapmap]
rs2017566	0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs2414551	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2899620	0.80[CEU][hapmap];0.91[MEX][hapmap];0.81[EUR][1000 genomes]
rs4350519	0.82[EUR][1000 genomes]
rs55803039	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56168508	0.81[EUR][1000 genomes]
rs56227417	0.81[EUR][1000 genomes]
rs62000511	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6493989	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs7180071	0.81[EUR][1000 genomes]
rs8034953	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2752813	chr15:58461006-58507064	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1050473	chr15:58479888-58562270	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58496600-58502000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr15:58499200-58503200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:58500400-58502200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr15:58500400-58502400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr15:58500400-58502800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr15:58500600-58502000	Enhancers	Right Atrium	heart
7	chr15:58500600-58502200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr15:58500600-58502200	Enhancers	NHDF-Ad	bronchial
9	chr15:58500600-58502800	Enhancers	NHEK	skin
10	chr15:58500800-58502200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:58500800-58502400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:58500800-58502400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:58500800-58502600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:58500800-58503000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:58501000-58501800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr15:58501000-58501800	Enhancers	Primary T cells fromperipheralblood	blood
17	chr15:58501000-58501800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:58501000-58501800	Enhancers	Left Ventricle	heart
19	chr15:58501000-58501800	Enhancers	NH-A	brain
20	chr15:58501000-58502200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:58501000-58502200	Enhancers	NHLF	lung
22	chr15:58501000-58502200	Enhancers	Osteobl	bone
23	chr15:58501000-58503000	Enhancers	HMEC	breast
24	chr15:58501200-58501800	Enhancers	Esophagus	oesophagus
25	chr15:58501200-58502200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr15:58501400-58502200	Enhancers	HUVEC	blood vessel

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