Variant report

Variant	rs1667227
Chromosome Location	chr18:29140514-29140515
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29114657..29116282-chr18:29138733..29141609,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10438932	0.84[EUR][1000 genomes]
rs12458967	0.83[EUR][1000 genomes]
rs13381522	0.90[EUR][1000 genomes]
rs1574501	0.87[EUR][1000 genomes]
rs1667282	1.00[ASN][1000 genomes]
rs17740990	0.86[EUR][1000 genomes]
rs1791185	0.87[EUR][1000 genomes]
rs1791190	0.87[EUR][1000 genomes]
rs1791196	0.86[EUR][1000 genomes]
rs1791206	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1900880	0.86[EUR][1000 genomes]
rs2852322	0.83[EUR][1000 genomes]
rs36204272	0.86[EUR][1000 genomes]
rs3764477	0.90[EUR][1000 genomes]
rs4799580	0.87[EUR][1000 genomes]
rs4799586	0.83[EUR][1000 genomes]
rs4799587	0.83[EUR][1000 genomes]
rs57844152	0.86[EUR][1000 genomes]
rs58616646	0.90[EUR][1000 genomes]
rs62093480	0.84[EUR][1000 genomes]
rs62093481	0.84[EUR][1000 genomes]
rs62095231	0.84[EUR][1000 genomes]
rs73418122	0.97[EUR][1000 genomes]
rs875119	0.87[EUR][1000 genomes]
rs875120	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066692	chr18:28856066-29190505	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv543674	chr18:28856066-29190505	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv916545	chr18:28898800-29166364	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv833615	chr18:29008396-29192976	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv576635	chr18:29129931-29148814	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29123600-29142200	Weak transcription	Fetal Kidney	kidney
2	chr18:29129200-29143200	Weak transcription	Gastric	stomach
3	chr18:29136600-29145400	Weak transcription	Fetal Intestine Small	intestine
4	chr18:29139000-29142600	Weak transcription	Liver	Liver
5	chr18:29140400-29140800	Enhancers	Placenta	Placenta

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