Variant report

Variant	rs1667282
Chromosome Location	chr18:29222086-29222087
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29209445..29212073-chr18:29221671..29224174,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1667227	1.00[ASN][1000 genomes]
rs1791206	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2848661	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909519	chr18:29172865-29330214	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1831348	chr18:29205526-29268786	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29194800-29226800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr18:29197600-29224800	Weak transcription	Brain Anterior Caudate	brain
3	chr18:29197600-29224800	Weak transcription	Brain Germinal Matrix	brain
4	chr18:29200000-29222400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr18:29202800-29235000	Weak transcription	Pancreas	Pancrea
6	chr18:29202800-29240200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr18:29203800-29226000	Weak transcription	Fetal Lung	lung
8	chr18:29203800-29227400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr18:29204000-29228400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr18:29204200-29223200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr18:29204400-29228400	Weak transcription	Psoas Muscle	Psoas
12	chr18:29204600-29238600	Weak transcription	Gastric	stomach
13	chr18:29205000-29227400	Weak transcription	A549	lung
14	chr18:29206800-29225800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr18:29208000-29227400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr18:29208200-29223200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr18:29208400-29227000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr18:29208400-29229000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr18:29208800-29222600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr18:29209000-29226000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr18:29209000-29228400	Weak transcription	Brain Angular Gyrus	brain
22	chr18:29210000-29223400	Weak transcription	Adipose Nuclei	Adipose
23	chr18:29210800-29224600	Weak transcription	Fetal Intestine Small	intestine
24	chr18:29211000-29223200	Weak transcription	Fetal Brain Female	brain
25	chr18:29211000-29227400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr18:29211200-29224800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr18:29211200-29225800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr18:29211200-29226000	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr18:29211200-29227400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr18:29213800-29229000	Weak transcription	HUVEC	blood vessel
31	chr18:29214400-29226000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr18:29214600-29225800	Weak transcription	Fetal Thymus	thymus
33	chr18:29214800-29228800	Weak transcription	NH-A	brain
34	chr18:29216000-29224600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr18:29216000-29229000	Weak transcription	Placenta	Placenta
36	chr18:29218800-29222600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr18:29218800-29232200	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr18:29219200-29222200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr18:29219200-29223800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr18:29219200-29223800	Weak transcription	Dnd41	blood
41	chr18:29219200-29224600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr18:29219200-29226600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr18:29219200-29227400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr18:29219200-29240000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr18:29219200-29252000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr18:29219200-29252000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr18:29220200-29223600	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr18:29220200-29224600	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr18:29220200-29227600	Weak transcription	Small Intestine	intestine
50	chr18:29220600-29224600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links