Variant report

Variant	rs167049
Chromosome Location	chr1:76610015-76610016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10493584	0.90[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs11162087	1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs1335737	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs392809	1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs4245647	1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs434587	0.92[EUR][1000 genomes]
rs571399	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7550790	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1488	chr1:76587622-76632635	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76576600-76620000	Weak transcription	Primary B cells from cord blood	blood
2	chr1:76588200-76615600	Weak transcription	Left Ventricle	heart
3	chr1:76592600-76610800	Weak transcription	Fetal Kidney	kidney
4	chr1:76594600-76615400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:76599800-76620200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:76606200-76613400	Weak transcription	Brain Anterior Caudate	brain
7	chr1:76606200-76614800	Weak transcription	Brain Angular Gyrus	brain
8	chr1:76606200-76620000	Weak transcription	Spleen	Spleen
9	chr1:76607600-76616000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr1:76608000-76620200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:76608200-76620200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:76608200-76620200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:76608400-76613200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr1:76608600-76612200	Enhancers	Ovary	ovary
15	chr1:76608600-76613000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr1:76608600-76616400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr1:76608800-76611200	Enhancers	Adipose Nuclei	Adipose
18	chr1:76608800-76611200	Enhancers	Fetal Intestine Small	intestine
19	chr1:76608800-76611600	Weak transcription	Brain Substantia Nigra	brain
20	chr1:76608800-76615600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr1:76609000-76610200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr1:76609000-76610200	Weak transcription	Fetal Intestine Large	intestine
23	chr1:76609000-76611000	Enhancers	Fetal Lung	lung
24	chr1:76609000-76611600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr1:76609200-76610400	Weak transcription	Brain Hippocampus Middle	brain
26	chr1:76609200-76612000	Weak transcription	Fetal Brain Male	brain
27	chr1:76609800-76610400	Enhancers	Fetal Stomach	stomach
28	chr1:76609800-76616800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr1:76610000-76610800	Weak transcription	Stomach Mucosa	stomach
30	chr1:76610000-76612600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr1:76610000-76616400	Weak transcription	Right Atrium	heart

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