Variant report

Variant	rs167186
Chromosome Location	chr3:139234533-139234534
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:139232297..139235206-chr3:139235450..139237494,2	K562	blood:
2	chr3:139233944..139235720-chr3:139238197..139241033,2	K562	blood:

Variant related genes	Relation type
ENSG00000114115	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10804665	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10935330	1.00[CEU][hapmap]
rs1371340	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1599744	0.86[EUR][1000 genomes]
rs16849065	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16849083	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs176986	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs176988	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs176989	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs211583	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs295491	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs295495	1.00[CEU][hapmap];0.81[AFR][1000 genomes]
rs4243399	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4525826	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55735000	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56265838	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60144275	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61525084	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6439851	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6788313	1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72988746	0.90[EUR][1000 genomes]
rs7372667	1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7372737	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73868351	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621965	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7636369	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9824044	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9824195	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9838015	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9864352	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9864740	1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877543	chr3:139021139-139327261	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1003154	chr3:139060841-139788752	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv536729	chr3:139060841-139788752	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv949635	chr3:139091219-139367043	Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv916193	chr3:139187767-139821526	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1001460	chr3:139194633-139241616	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139208200-139249600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:139213400-139235600	Weak transcription	Pancreas	Pancrea
3	chr3:139213400-139235600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:139213400-139239000	Weak transcription	Brain Substantia Nigra	brain
5	chr3:139213600-139234800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:139217400-139236000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:139223000-139247000	Weak transcription	Left Ventricle	heart
8	chr3:139226400-139235400	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:139227200-139238600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr3:139228600-139245000	Weak transcription	Spleen	Spleen
11	chr3:139228800-139253200	Weak transcription	Gastric	stomach
12	chr3:139231000-139252800	Weak transcription	Right Ventricle	heart
13	chr3:139232400-139244400	Weak transcription	HSMMtube	muscle
14	chr3:139232600-139236000	Weak transcription	Fetal Intestine Small	intestine
15	chr3:139232800-139235200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr3:139233000-139235400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr3:139233000-139235400	Weak transcription	NH-A	brain
18	chr3:139233600-139235400	Weak transcription	Brain Anterior Caudate	brain
19	chr3:139233600-139238400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr3:139233800-139241200	Weak transcription	Fetal Brain Male	brain
21	chr3:139234000-139235600	Weak transcription	Brain Germinal Matrix	brain
22	chr3:139234200-139236000	Strong transcription	Fetal Stomach	stomach
23	chr3:139234200-139236200	Strong transcription	Fetal Lung	lung
24	chr3:139234200-139237000	Strong transcription	Fetal Muscle Leg	muscle
25	chr3:139234200-139237400	Strong transcription	Fetal Intestine Large	intestine
26	chr3:139234200-139237400	Strong transcription	Ovary	ovary
27	chr3:139234400-139252600	Weak transcription	Lung	lung

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