Variant report

Variant	rs1673211
Chromosome Location	chr7:138283580-138283581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1116324	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12666310	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1371463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1614641	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1616318	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1659830	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1659831	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1659832	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1673204	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1673206	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1673207	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2353354	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62485263	0.82[EUR][1000 genomes]
rs62485264	0.85[EUR][1000 genomes]
rs728092	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138272600-138286200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:138273000-138284000	Weak transcription	Fetal Kidney	kidney
3	chr7:138273000-138285000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:138273000-138286200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr7:138273000-138286200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:138273600-138286800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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