Variant report

Variant	rs1677057
Chromosome Location	chr3:81495050-81495051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1461614	0.84[AFR][1000 genomes]
rs1677058	0.82[AFR][1000 genomes]
rs17018940	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28367881	0.86[EUR][1000 genomes]
rs35058426	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59299387	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62265374	0.85[EUR][1000 genomes]
rs62265376	0.86[EUR][1000 genomes]
rs62265377	0.87[EUR][1000 genomes]
rs6769105	0.82[JPT][hapmap]
rs7615728	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9309871	0.81[EUR][1000 genomes]
rs968778	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9818063	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9822115	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9843238	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9847959	0.87[EUR][1000 genomes]
rs9867226	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9871529	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934018	chr3:81413060-81655338	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv933756	chr3:81413060-81754738	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1003217	chr3:81435044-81752521	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81486800-81503200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:81491400-81497800	Enhancers	Osteobl	bone
3	chr3:81492000-81499600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:81492800-81500400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:81493600-81503000	Weak transcription	Aorta	Aorta
6	chr3:81493800-81495600	Weak transcription	Adipose Nuclei	Adipose
7	chr3:81493800-81497600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:81494000-81495800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr3:81494200-81495600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:81494400-81498200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:81494600-81495600	Weak transcription	NHDF-Ad	bronchial
12	chr3:81495000-81500800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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