Variant report

Variant	rs1678433
Chromosome Location	chr3:138069376-138069377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:138066201..138068907-chr3:138068935..138070591,2	MCF-7	breast:
2	chr3:138047736..138050493-chr3:138067682..138070270,2	MCF-7	breast:
3	chr3:138069326..138072318-chr3:138105183..138106708,2	K562	blood:

Variant related genes	Relation type
ENSG00000158186	Chromatin interaction
ENSG00000181322	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6785463	1.00[AMR][1000 genomes]
rs6795079	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530056	chr3:137312356-138161861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv877537	chr3:137979007-138215114	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv530057	chr3:138014877-138734390	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv528349	chr3:138025396-138132393	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1796956	chr3:138051423-138122781	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv1848610	chr3:138051423-138133412	Bivalent Enhancer Genic enhancers Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138066400-138069800	Active TSS	Right Atrium	heart
2	chr3:138066400-138070000	Active TSS	HSMM	muscle
3	chr3:138066600-138069800	Active TSS	HSMMtube	muscle
4	chr3:138068000-138069400	Flanking Active TSS	Brain Hippocampus Middle	brain
5	chr3:138068000-138069400	Flanking Active TSS	Fetal Muscle Leg	muscle
6	chr3:138068000-138069600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:138068000-138069600	Flanking Active TSS	Adipose Nuclei	Adipose
8	chr3:138068000-138069800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:138068000-138070000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr3:138068000-138070200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr3:138068200-138069400	Flanking Active TSS	Brain Cingulate Gyrus	brain
12	chr3:138068200-138069400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
13	chr3:138068200-138069400	Flanking Active TSS	NHLF	lung
14	chr3:138068200-138069600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr3:138068200-138069600	Flanking Active TSS	Stomach Smooth Muscle	stomach
16	chr3:138068400-138069400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:138068400-138069400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr3:138068400-138069400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:138068400-138069400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:138068400-138069400	Enhancers	Spleen	Spleen
21	chr3:138068400-138069400	Flanking Active TSS	Osteobl	bone
22	chr3:138068400-138069600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr3:138068400-138069800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:138068400-138070000	Enhancers	Fetal Brain Male	brain
25	chr3:138068400-138071000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:138068400-138083000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr3:138068600-138069400	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr3:138068600-138069400	Enhancers	Pancreas	Pancrea
29	chr3:138068600-138069600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr3:138068600-138069600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr3:138068600-138070200	Active TSS	Duodenum Smooth Muscle	Duodenum
32	chr3:138068600-138070200	Active TSS	Right Ventricle	heart
33	chr3:138068600-138070200	Weak transcription	HMEC	breast
34	chr3:138068600-138070800	Weak transcription	Esophagus	oesophagus
35	chr3:138068600-138071800	Enhancers	Placenta	Placenta
36	chr3:138068600-138084600	Weak transcription	Gastric	stomach
37	chr3:138068800-138069400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
38	chr3:138068800-138069400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
39	chr3:138068800-138069400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr3:138068800-138069400	Enhancers	Duodenum Mucosa	Duodenum
41	chr3:138068800-138069400	Enhancers	Rectal Smooth Muscle	rectum
42	chr3:138068800-138069600	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr3:138068800-138069600	Enhancers	HepG2	liver
44	chr3:138068800-138069800	Enhancers	Lung	lung
45	chr3:138068800-138075800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr3:138068800-138076000	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr3:138068800-138093200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr3:138069000-138069400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr3:138069000-138069400	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr3:138069000-138069400	Enhancers	Cortex derived primary cultured neurospheres	brain

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