Variant report

Variant	rs1678784
Chromosome Location	chr1:93464723-93464724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93459371..93463416-chr1:93464297..93466371,4	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1011663	0.87[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs10747454	0.82[ASN][1000 genomes]
rs10874752	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs11164827	0.82[CHB][hapmap]
rs11164838	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs11164850	0.87[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs11164851	0.87[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs11164854	0.87[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs11164855	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs12049007	0.93[ASN][1000 genomes]
rs12120036	0.93[ASN][1000 genomes]
rs12130044	0.88[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs12144226	0.86[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs2086314	0.93[ASN][1000 genomes]
rs2127398	0.93[ASN][1000 genomes]
rs2127400	0.93[ASN][1000 genomes]
rs28561471	0.82[ASN][1000 genomes]
rs3943283	0.88[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs4515797	0.84[ASN][1000 genomes]
rs4847226	0.94[ASN][1000 genomes]
rs4847386	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs4847389	0.81[CEU][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs514235	1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs521428	1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs534409	0.84[ASN][1000 genomes]
rs567613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs579800	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs594527	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs606344	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs619784	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs641462	1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs655026	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs660870	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs663112	0.91[ASN][1000 genomes]
rs6671078	0.84[ASN][1000 genomes]
rs6671268	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs7517539	0.81[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs7524934	0.87[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs753391	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs770883	0.88[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs770884	0.84[ASN][1000 genomes]
rs945630	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93451800-93466000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:93459800-93466000	Weak transcription	Brain Anterior Caudate	brain
3	chr1:93459800-93466000	Weak transcription	GM12878-XiMat	blood
4	chr1:93461800-93466000	Weak transcription	Pancreas	Pancrea
5	chr1:93462200-93465200	Weak transcription	Fetal Intestine Small	intestine
6	chr1:93462200-93465800	Weak transcription	Stomach Mucosa	stomach
7	chr1:93462800-93466000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:93463200-93465800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr1:93463800-93465600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr1:93463800-93466000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:93463800-93466000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:93463800-93466000	Weak transcription	Placenta	Placenta
13	chr1:93463800-93467600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:93464400-93464800	Enhancers	Fetal Muscle Leg	muscle
15	chr1:93464600-93464800	Enhancers	H1 Cell Line	embryonic stem cell
16	chr1:93464600-93465000	Weak transcription	Fetal Intestine Large	intestine

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