Variant report

Variant	rs1681953
Chromosome Location	chr6:64308786-64308787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:64293154..64295077-chr6:64308452..64310609,2	K562	blood:
2	chr6:64308263..64309124-chr6:64469501..64470138,2	MCF-7	breast:
3	chr6:64308218..64308885-chr6:64473955..64474904,2	K562	blood:
4	chr6:64307384..64309473-chr6:64334583..64337195,2	K562	blood:
5	chr6:64306565..64309753-chr6:64343946..64347831,5	K562	blood:
6	chr6:64299036..64303200-chr6:64306803..64309022,3	K562	blood:
7	chr6:64283629..64285650-chr6:64307693..64310407,3	MCF-7	breast:
8	chr6:64293078..64295077-chr6:64307803..64310609,3	K562	blood:
9	chr6:64308123..64308904-chr6:64474005..64474974,3	MCF-7	breast:
10	chr6:64303581..64305440-chr6:64306107..64308882,2	K562	blood:
11	chr6:64062641..64063566-chr6:64308201..64309203,4	MCF-7	breast:
12	chr6:64281379..64284706-chr6:64307594..64310683,4	K562	blood:
13	chr6:64281185..64283596-chr6:64306187..64309666,3	MCF-7	breast:
14	chr6:64307189..64310027-chr6:64312721..64315208,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000266680	Chromatin interaction
ENSG00000112245	Chromatin interaction
ENSG00000118482	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1062193	0.82[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11754293	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11755111	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756680	0.89[ASN][1000 genomes]
rs11757655	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11759362	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11759581	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1197892	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1210839	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1681967	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16879705	0.82[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16894454	1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16894460	1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16894480	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16894491	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16894493	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1744156	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1744163	1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1872288	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1905595	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1905597	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1923521	0.89[ASN][1000 genomes]
rs1923522	0.89[ASN][1000 genomes]
rs2075656	1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2622310	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2622313	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28396397	0.89[ASN][1000 genomes]
rs28635226	0.89[ASN][1000 genomes]
rs2881842	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35468218	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35811627	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3800494	1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3857527	0.88[ASN][1000 genomes]
rs4710434	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56950873	0.89[ASN][1000 genomes]
rs56977573	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57258726	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57519486	0.89[ASN][1000 genomes]
rs57899418	0.89[ASN][1000 genomes]
rs58016244	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58173616	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58374599	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58779953	0.89[ASN][1000 genomes]
rs59458355	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59589817	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60727297	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60863270	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61382532	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61426335	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61580957	0.88[ASN][1000 genomes]
rs6454298	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66500769	0.89[ASN][1000 genomes]
rs66508463	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66514362	0.81[EUR][1000 genomes]
rs66559225	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66618112	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66648865	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66683185	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66769846	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66924207	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66943356	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66984720	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67048845	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67118169	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67125777	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67260200	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67549604	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67640372	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67805256	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67879075	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67885904	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6929720	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6936079	1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72880876	0.89[ASN][1000 genomes]
rs72880879	0.89[ASN][1000 genomes]
rs72880884	0.89[ASN][1000 genomes]
rs72882716	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72882748	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72882751	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7746492	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7766283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7766347	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7767556	0.89[ASN][1000 genomes]
rs9449520	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64307600-64309000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:64307600-64309000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:64307600-64309000	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr6:64307600-64309200	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr6:64307600-64309200	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr6:64307600-64309200	Active TSS	Brain Anterior Caudate	brain
7	chr6:64307800-64308800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:64307800-64308800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:64307800-64308800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:64307800-64308800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr6:64307800-64308800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:64307800-64308800	Active TSS	Aorta	Aorta
13	chr6:64307800-64308800	Flanking Active TSS	Liver	Liver
14	chr6:64307800-64308800	Active TSS	Brain Inferior Temporal Lobe	brain
15	chr6:64307800-64308800	Active TSS	Colonic Mucosa	Colon
16	chr6:64307800-64308800	Active TSS	Pancreas	Pancrea
17	chr6:64307800-64308800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
18	chr6:64307800-64308800	Flanking Active TSS	NHEK	skin
19	chr6:64307800-64308800	Flanking Active TSS	Osteobl	bone
20	chr6:64307800-64309000	Active TSS	H9 Cell Line	embryonic stem cell
21	chr6:64307800-64309000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:64307800-64309000	Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr6:64307800-64309000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:64307800-64309000	Active TSS	Breast Myoepithelial Primary Cells	Breast
25	chr6:64307800-64309000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
26	chr6:64307800-64309000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:64307800-64309000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:64307800-64309000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:64307800-64309000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:64307800-64309000	Active TSS	Brain Cingulate Gyrus	brain
31	chr6:64307800-64309000	Active TSS	Brain Substantia Nigra	brain
32	chr6:64307800-64309000	Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr6:64307800-64309000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
34	chr6:64307800-64309000	Active TSS	Fetal Heart	heart
35	chr6:64307800-64309000	Active TSS	Fetal Intestine Large	intestine
36	chr6:64307800-64309000	Active TSS	Fetal Intestine Small	intestine
37	chr6:64307800-64309000	Active TSS	Fetal Kidney	kidney
38	chr6:64307800-64309000	Active TSS	Rectal Mucosa Donor 31	rectum
39	chr6:64307800-64309000	Active TSS	Right Atrium	heart
40	chr6:64307800-64309000	Active TSS	Stomach Smooth Muscle	stomach
41	chr6:64307800-64309000	Flanking Active TSS	GM12878-XiMat	blood
42	chr6:64307800-64309000	Flanking Active TSS	HMEC	breast
43	chr6:64307800-64309000	Active TSS	NHLF	lung
44	chr6:64307800-64309200	Active TSS	A549	lung
45	chr6:64308000-64308800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
46	chr6:64308000-64308800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr6:64308000-64308800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr6:64308000-64308800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
49	chr6:64308000-64308800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
50	chr6:64308000-64308800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood

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