Variant report

Variant	rs1681967
Chromosome Location	chr6:64270790-64270791
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64200675..64201588-chr6:64270550..64271368,3	MCF-7	breast:

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1062193	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.88[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754293	1.00[JPT][hapmap]
rs11755111	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11756680	0.96[ASN][1000 genomes]
rs11757655	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11759362	0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11759581	1.00[JPT][hapmap]
rs1197892	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1210839	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1681953	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16879705	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894454	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16894460	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894480	0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16894491	1.00[JPT][hapmap]
rs16894493	1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1744156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.88[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1744163	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1872288	1.00[CEU][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1905595	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1905597	1.00[JPT][hapmap]
rs1923521	0.96[ASN][1000 genomes]
rs1923522	0.96[ASN][1000 genomes]
rs2075656	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2622310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2622313	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28396397	0.96[ASN][1000 genomes]
rs28635226	0.96[ASN][1000 genomes]
rs2881842	0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35468218	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35811627	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3800494	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3857527	0.95[ASN][1000 genomes]
rs4710434	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56950873	0.96[ASN][1000 genomes]
rs56977573	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57258726	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57519486	0.96[ASN][1000 genomes]
rs57899418	0.96[ASN][1000 genomes]
rs58016244	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58173616	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58374599	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58779953	0.96[ASN][1000 genomes]
rs59458355	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59589817	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60727297	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60863270	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61382532	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61426335	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61580957	0.95[ASN][1000 genomes]
rs6454298	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66500769	0.96[ASN][1000 genomes]
rs66508463	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66514362	0.81[EUR][1000 genomes]
rs66559225	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66618112	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66648865	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66683185	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66769846	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66924207	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66943356	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66984720	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67048845	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67118169	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67125777	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67260200	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67549604	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67640372	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67805256	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67879075	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67885904	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6929720	0.87[ASW][hapmap];1.00[CEU][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6936079	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72880852	0.82[ASN][1000 genomes]
rs72880876	0.96[ASN][1000 genomes]
rs72880879	0.96[ASN][1000 genomes]
rs72880884	0.96[ASN][1000 genomes]
rs72882716	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72882748	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72882751	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7746492	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7766283	0.87[ASW][hapmap];1.00[CEU][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7766347	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7767556	0.96[ASN][1000 genomes]
rs9449520	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64265800-64270800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr6:64266400-64270800	Weak transcription	HMEC	breast
3	chr6:64267000-64270800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:64267000-64270800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:64267000-64275400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:64267200-64270800	Weak transcription	NHEK	skin
7	chr6:64268200-64273000	Enhancers	Hela-S3	cervix
8	chr6:64269800-64271000	Enhancers	HepG2	liver
9	chr6:64270400-64270800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:64270400-64270800	Flanking Active TSS	A549	lung
11	chr6:64270400-64271200	Enhancers	Liver	Liver
12	chr6:64270400-64271400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:64270600-64271200	Enhancers	Osteobl	bone
14	chr6:64270600-64271600	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr6:64270600-64271800	Enhancers	Stomach Mucosa	stomach

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