Variant report

Variant	rs16823718
Chromosome Location	chr2:145197898-145197899
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:145197694..145199752-chr2:145203612..145206224,2	MCF-7	breast:
2	chr2:145197489..145199273-chr2:145272443..145274142,2	K562	blood:
3	chr2:145197698..145202447-chr2:145209802..145215980,7	K562	blood:
4	chr2:145196931..145199466-chr2:145218622..145221129,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1256916	1.00[AMR][1000 genomes]
rs16823571	1.00[AMR][1000 genomes]
rs16823594	1.00[AMR][1000 genomes]
rs16823596	1.00[AMR][1000 genomes]
rs16823598	1.00[AMR][1000 genomes]
rs16823607	1.00[AMR][1000 genomes]
rs16823684	1.00[AMR][1000 genomes]
rs60695751	1.00[AMR][1000 genomes]
rs6430063	1.00[AMR][1000 genomes]
rs6761553	1.00[AMR][1000 genomes]
rs72992123	1.00[AMR][1000 genomes]
rs72992134	1.00[AMR][1000 genomes]
rs72992136	1.00[AMR][1000 genomes]
rs72992138	1.00[AMR][1000 genomes]
rs73008262	1.00[AMR][1000 genomes]
rs73008283	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532755	chr2:144631279-145270874	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1006344	chr2:144657716-145334899	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv535951	chr2:144657716-145334899	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1067624	chr2:144657717-145425705	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv531413	chr2:144657717-145425705	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv532756	chr2:144746353-145315596	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv1008032	chr2:144840552-145234229	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv997624	chr2:144906679-145294503	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
9	nsv535952	chr2:144906679-145294503	Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
10	nsv532757	chr2:144922143-145263446	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
11	nsv916172	chr2:144970681-145425713	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
12	nsv948474	chr2:145035890-145436665	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
13	nsv535953	chr2:145099512-145336083	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
14	nsv535954	chr2:145128008-145311097	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
15	nsv535955	chr2:145143961-145298714	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
16	nsv535956	chr2:145178224-145311097	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
17	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
18	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
19	nsv535958	chr2:145190081-145285400	Bivalent Enhancer Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145157800-145206200	Weak transcription	Lung	lung
2	chr2:145162600-145206600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:145179000-145210200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr2:145185600-145203000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr2:145187600-145198200	Weak transcription	Placenta	Placenta
6	chr2:145187600-145198200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr2:145189000-145198400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr2:145189200-145198400	Weak transcription	Right Ventricle	heart
9	chr2:145189200-145199600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr2:145189200-145206600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:145189400-145198400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr2:145190000-145201000	Weak transcription	Fetal Kidney	kidney
13	chr2:145190800-145198200	Weak transcription	Fetal Heart	heart
14	chr2:145190800-145199600	Weak transcription	Osteobl	bone
15	chr2:145190800-145205200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr2:145190800-145206200	Enhancers	Brain Substantia Nigra	brain
17	chr2:145191000-145201000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr2:145191400-145198200	Weak transcription	NHLF	lung
19	chr2:145191600-145198600	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr2:145191600-145200000	Genic enhancers	Primary monocytes fromperipheralblood	blood
21	chr2:145192200-145202000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr2:145192400-145198400	Weak transcription	Fetal Stomach	stomach
23	chr2:145192400-145198800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr2:145192600-145198400	Enhancers	Brain Hippocampus Middle	brain
25	chr2:145192800-145198400	Weak transcription	Right Atrium	heart
26	chr2:145193000-145198400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr2:145193000-145198800	Weak transcription	HSMMtube	muscle
28	chr2:145193000-145202000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr2:145193400-145198400	Weak transcription	Fetal Muscle Trunk	muscle
30	chr2:145194200-145198200	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr2:145194800-145210600	Weak transcription	Gastric	stomach
32	chr2:145195200-145199600	Weak transcription	Fetal Intestine Small	intestine
33	chr2:145195200-145201000	Weak transcription	HUVEC	blood vessel
34	chr2:145195200-145201200	Enhancers	Fetal Brain Male	brain
35	chr2:145195400-145198400	Genic enhancers	K562	blood
36	chr2:145195600-145199600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr2:145195800-145199000	Enhancers	Fetal Brain Female	brain
38	chr2:145195800-145202200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr2:145196000-145198600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr2:145196000-145198800	Weak transcription	HSMM	muscle
41	chr2:145196000-145199800	Enhancers	Brain Angular Gyrus	brain
42	chr2:145196000-145201400	Weak transcription	A549	lung
43	chr2:145196000-145204000	Enhancers	Brain Anterior Caudate	brain
44	chr2:145196200-145199000	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr2:145196200-145201800	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr2:145196200-145202400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr2:145196200-145203400	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr2:145196200-145204000	Enhancers	Brain Cingulate Gyrus	brain
49	chr2:145196400-145198800	Enhancers	H1 Cell Line	embryonic stem cell
50	chr2:145196400-145199400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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