Variant report

Variant	rs16824106
Chromosome Location	chr2:184046090-184046091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:184042932..184045706-chr2:184045938..184048137,2	K562	blood:
2	chr2:184045304..184046832-chr2:184050150..184052300,2	K562	blood:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10497620	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10497624	0.83[ASN][1000 genomes]
rs11682917	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11893835	0.84[ASN][1000 genomes]
rs11904393	0.84[ASN][1000 genomes]
rs1316842	0.83[ASN][1000 genomes]
rs1400132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1462534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16823717	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16823721	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16823723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16823970	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs16823971	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs16823974	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16824001	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16824018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16824025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16824033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16824048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16824058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16824059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16824095	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17706149	1.00[ASN][1000 genomes]
rs17757704	0.83[ASN][1000 genomes]
rs17757841	0.84[ASN][1000 genomes]
rs1997486	0.96[ASN][1000 genomes]
rs2017742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2176232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2368372	1.00[EUR][1000 genomes]
rs2368373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2675094	0.83[ASN][1000 genomes]
rs2887234	0.82[CHB][hapmap]
rs35453132	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3748879	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs3748881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3748882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3762476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4372840	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4467235	0.84[ASN][1000 genomes]
rs4606882	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4666611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4666612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4666620	1.00[ASN][1000 genomes]
rs4666890	1.00[ASN][1000 genomes]
rs4666892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4666896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4666898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55942934	0.82[EUR][1000 genomes]
rs56271556	0.82[EUR][1000 genomes]
rs56402172	0.96[ASN][1000 genomes]
rs59041013	0.82[EUR][1000 genomes]
rs59876240	0.81[ASN][1000 genomes]
rs61283216	0.82[EUR][1000 genomes]
rs61526412	0.82[EUR][1000 genomes]
rs6736682	0.84[ASN][1000 genomes]
rs72892678	0.96[ASN][1000 genomes]
rs72892681	0.96[ASN][1000 genomes]
rs72892682	0.96[ASN][1000 genomes]
rs72892683	0.96[ASN][1000 genomes]
rs72892686	0.84[ASN][1000 genomes]
rs72892687	0.84[ASN][1000 genomes]
rs72892688	0.96[ASN][1000 genomes]
rs72892690	0.96[ASN][1000 genomes]
rs72894514	0.96[ASN][1000 genomes]
rs72894558	0.96[ASN][1000 genomes]
rs72896596	1.00[ASN][1000 genomes]
rs72896599	1.00[ASN][1000 genomes]
rs72898571	0.83[ASN][1000 genomes]
rs73036601	0.82[EUR][1000 genomes]
rs7591252	1.00[ASN][1000 genomes]
rs9333281	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9333283	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs987607	0.81[ASN][1000 genomes]
rs987608	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1005281	chr2:183803173-184093877	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv875485	chr2:183827018-184195265	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1010799	chr2:183855680-184244721	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv536072	chr2:183855680-184244721	Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv875486	chr2:184016627-184095979	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183990000-184050000	Weak transcription	Aorta	Aorta
2	chr2:183991000-184048400	Weak transcription	Brain Angular Gyrus	brain
3	chr2:183991000-184053400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr2:183991000-184055400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:183991400-184049600	Weak transcription	NHDF-Ad	bronchial
6	chr2:183992400-184047600	Weak transcription	Hela-S3	cervix
7	chr2:184009200-184048400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr2:184009400-184047200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr2:184015000-184062000	Weak transcription	Small Intestine	intestine
10	chr2:184018400-184047400	Weak transcription	Pancreas	Pancrea
11	chr2:184019000-184050000	Weak transcription	Gastric	stomach
12	chr2:184019000-184053400	Weak transcription	Placenta	Placenta
13	chr2:184026000-184054600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr2:184026000-184057600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr2:184026600-184058800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr2:184026800-184047400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr2:184027600-184057600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr2:184029000-184047400	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr2:184029200-184047200	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr2:184029200-184047200	Weak transcription	HepG2	liver
21	chr2:184029200-184047400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr2:184029200-184047400	Weak transcription	HSMM	muscle
23	chr2:184029200-184050000	Weak transcription	HUVEC	blood vessel
24	chr2:184029200-184054800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr2:184029200-184062800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr2:184029400-184047400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr2:184029400-184047400	Weak transcription	K562	blood
28	chr2:184029400-184050200	Weak transcription	Osteobl	bone
29	chr2:184029400-184053000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr2:184029600-184047200	Weak transcription	Primary B cells from cord blood	blood
31	chr2:184029600-184047400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr2:184030000-184047400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr2:184031200-184047200	Weak transcription	GM12878-XiMat	blood
34	chr2:184031200-184047400	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr2:184031200-184050200	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr2:184031200-184057600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr2:184031400-184052800	Weak transcription	Fetal Thymus	thymus
38	chr2:184034200-184048800	Weak transcription	HMEC	breast
39	chr2:184036800-184050200	Weak transcription	Spleen	Spleen
40	chr2:184037200-184047400	Weak transcription	NHEK	skin
41	chr2:184037600-184050000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr2:184037600-184050200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr2:184037600-184057600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr2:184040800-184048600	Weak transcription	Brain Substantia Nigra	brain
45	chr2:184042400-184048400	Weak transcription	Fetal Brain Male	brain
46	chr2:184042600-184047200	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr2:184043000-184046200	Strong transcription	Dnd41	blood
48	chr2:184043000-184047400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr2:184043200-184047400	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr2:184043200-184047400	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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