Variant report

Variant	rs16829506
Chromosome Location	chr2:134564790-134564791
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs13424416	1.00[EUR][1000 genomes]
rs16829423	1.00[EUR][1000 genomes]
rs16829743	1.00[EUR][1000 genomes]
rs16829792	1.00[EUR][1000 genomes]
rs16829808	1.00[EUR][1000 genomes]
rs34979285	1.00[EUR][1000 genomes]
rs56170261	1.00[EUR][1000 genomes]
rs57028673	1.00[EUR][1000 genomes]
rs57898906	1.00[EUR][1000 genomes]
rs58799403	1.00[EUR][1000 genomes]
rs59471650	1.00[EUR][1000 genomes]
rs59601058	1.00[EUR][1000 genomes]
rs59785320	1.00[EUR][1000 genomes]
rs60573351	1.00[EUR][1000 genomes]
rs61290996	1.00[EUR][1000 genomes]
rs61465743	1.00[EUR][1000 genomes]
rs6430445	1.00[EUR][1000 genomes]
rs6726548	1.00[EUR][1000 genomes]
rs6745294	1.00[EUR][1000 genomes]
rs6753469	1.00[EUR][1000 genomes]
rs6757963	1.00[EUR][1000 genomes]
rs72999768	1.00[EUR][1000 genomes]
rs72999775	1.00[EUR][1000 genomes]
rs72999782	1.00[EUR][1000 genomes]
rs72999787	1.00[EUR][1000 genomes]
rs72999793	1.00[EUR][1000 genomes]
rs73003855	1.00[EUR][1000 genomes]
rs73003879	1.00[EUR][1000 genomes]
rs73003897	1.00[EUR][1000 genomes]
rs73003900	1.00[EUR][1000 genomes]
rs73005709	1.00[EUR][1000 genomes]
rs73005714	1.00[EUR][1000 genomes]
rs73005722	1.00[EUR][1000 genomes]
rs73005734	1.00[EUR][1000 genomes]
rs73007661	1.00[EUR][1000 genomes]
rs73957243	1.00[EUR][1000 genomes]
rs73960110	1.00[EUR][1000 genomes]
rs7584447	1.00[EUR][1000 genomes]
rs7592843	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003624	chr2:134126928-134583203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1006101	chr2:134263288-134973917	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1013713	chr2:134322236-134644574	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv535931	chr2:134322236-134644574	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:134562600-134565000	Enhancers	HUVEC	blood vessel
2	chr2:134563000-134565000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:134563800-134573000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:134564400-134564800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:134564600-134564800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:134564600-134565000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links