Variant report
| Variant | rs16829641 |
|---|---|
| Chromosome Location | chr3:118993976-118993977 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:118993504..118994563-chr3:119066421..119067384,3 | MCF-7 | breast: | |
| 2 | chr3:118993597..118994237-chr3:119071834..119072370,2 | K562 | blood: | |
| 3 | chr3:118993429..118993994-chr3:119041299..119042155,2 | MCF-7 | breast: | |
| 4 | chr3:118993529..118994423-chr3:119071824..119072793,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000241155 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs16829569 | 0.89[MEX][hapmap] |
| rs16829666 | 0.92[CHB][hapmap];0.82[ASN][1000 genomes] |
| rs4284973 | 0.84[MEX][hapmap] |
| rs58789681 | 0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs59960682 | 0.82[ASN][1000 genomes] |
| rs6438515 | 0.82[ASN][1000 genomes] |
| rs6438516 | 0.82[ASN][1000 genomes] |
| rs72956771 | 0.82[ASN][1000 genomes] |
| rs72956776 | 0.82[ASN][1000 genomes] |
| rs72960606 | 0.82[ASN][1000 genomes] |
| rs72960608 | 0.82[ASN][1000 genomes] |
| rs72960626 | 0.82[AMR][1000 genomes] |
| rs7614907 | 0.89[MEX][hapmap] |
| rs7645237 | 0.82[ASN][1000 genomes] |
| rs9289126 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3487859 | chr3:118570588-119419623 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
| 2 | esv3487860 | chr3:118570588-119419623 | Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
| 3 | esv18354 | chr3:118855337-119000251 | Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:118993600-118995000 | Enhancers | A549 | lung |
