Variant report
| Variant | rs16829743 |
|---|---|
| Chromosome Location | chr2:134662497-134662498 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs13424416 | 1.00[EUR][1000 genomes] |
| rs16829423 | 1.00[EUR][1000 genomes] |
| rs16829506 | 1.00[EUR][1000 genomes] |
| rs16829792 | 1.00[EUR][1000 genomes] |
| rs16829808 | 1.00[EUR][1000 genomes] |
| rs34979285 | 1.00[EUR][1000 genomes] |
| rs56170261 | 1.00[EUR][1000 genomes] |
| rs57028673 | 1.00[EUR][1000 genomes] |
| rs57898906 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58799403 | 1.00[EUR][1000 genomes] |
| rs59471650 | 1.00[EUR][1000 genomes] |
| rs59601058 | 1.00[EUR][1000 genomes] |
| rs59785320 | 1.00[EUR][1000 genomes] |
| rs60573351 | 1.00[EUR][1000 genomes] |
| rs61465743 | 1.00[EUR][1000 genomes] |
| rs6726548 | 1.00[EUR][1000 genomes] |
| rs6745294 | 1.00[EUR][1000 genomes] |
| rs6753469 | 1.00[EUR][1000 genomes] |
| rs6757963 | 1.00[EUR][1000 genomes] |
| rs72999768 | 1.00[EUR][1000 genomes] |
| rs72999775 | 1.00[EUR][1000 genomes] |
| rs72999782 | 1.00[EUR][1000 genomes] |
| rs72999787 | 1.00[EUR][1000 genomes] |
| rs72999793 | 1.00[EUR][1000 genomes] |
| rs73003879 | 1.00[EUR][1000 genomes] |
| rs73003897 | 1.00[EUR][1000 genomes] |
| rs73003900 | 1.00[EUR][1000 genomes] |
| rs73005709 | 1.00[EUR][1000 genomes] |
| rs73005714 | 1.00[EUR][1000 genomes] |
| rs73005722 | 1.00[EUR][1000 genomes] |
| rs73005734 | 1.00[EUR][1000 genomes] |
| rs73007661 | 1.00[EUR][1000 genomes] |
| rs73957243 | 1.00[EUR][1000 genomes] |
| rs73960110 | 1.00[EUR][1000 genomes] |
| rs7584447 | 1.00[EUR][1000 genomes] |
| rs7592843 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1006101 | chr2:134263288-134973917 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:134662200-134662800 | Enhancers | Fetal Heart | heart |
