Variant report

Variant	rs16830442
Chromosome Location	chr3:119484578-119484579
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12721611	1.00[AMR][1000 genomes]
rs12721616	1.00[AMR][1000 genomes]
rs1523128	1.00[EUR][1000 genomes]
rs1523129	1.00[EUR][1000 genomes]
rs2472668	1.00[EUR][1000 genomes]
rs4688036	1.00[EUR][1000 genomes]
rs4688038	1.00[EUR][1000 genomes]
rs72963177	1.00[AMR][1000 genomes]
rs72963183	1.00[AMR][1000 genomes]
rs72963185	1.00[AMR][1000 genomes]
rs954356	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119473800-119484800	Weak transcription	Pancreas	Pancrea
2	chr3:119474400-119493400	Weak transcription	Ovary	ovary
3	chr3:119484000-119487600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr3:119484400-119485000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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