Variant report

Variant	rs16831491
Chromosome Location	chr3:120273507-120273508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16831308	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16831321	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16831328	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16831400	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16831487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16831500	1.00[ASN][1000 genomes]
rs16831503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17140276	1.00[ASN][1000 genomes]
rs17140280	1.00[ASN][1000 genomes]
rs2319827	1.00[CHB][hapmap]
rs4676817	1.00[CHB][hapmap]
rs4676818	1.00[CHB][hapmap]
rs6770836	1.00[ASN][1000 genomes]
rs72960832	1.00[ASN][1000 genomes]
rs7633287	1.00[ASN][1000 genomes]
rs909078	1.00[CHB][hapmap]
rs985190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9881574	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007557	chr3:119892894-120764353	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv536706	chr3:119892894-120764353	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv1006428	chr3:120015620-120421982	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	esv3369381	chr3:120066425-120425510	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	esv3350409	chr3:120066445-120425480	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	nsv3970	chr3:120235247-120280294	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv508238	chr3:120248574-120329424	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:120269200-120273800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:120269400-120273800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:120270000-120273600	Weak transcription	Adipose Nuclei	Adipose
4	chr3:120270000-120273800	Weak transcription	Osteobl	bone
5	chr3:120270200-120273800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:120271400-120276200	Weak transcription	Right Ventricle	heart
7	chr3:120271400-120277200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:120272000-120273800	Weak transcription	Right Atrium	heart
9	chr3:120272000-120277000	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:120272600-120273800	Weak transcription	Left Ventricle	heart
11	chr3:120273000-120274400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:120273000-120277000	Enhancers	Colon Smooth Muscle	Colon
13	chr3:120273200-120276800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:120273400-120273600	Flanking Active TSS	Liver	Liver
15	chr3:120273400-120275200	Enhancers	Rectal Smooth Muscle	rectum
16	chr3:120273400-120275200	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr3:120273400-120275200	Enhancers	NHDF-Ad	bronchial
18	chr3:120273400-120275800	Enhancers	Fetal Heart	heart
19	chr3:120273400-120277200	Enhancers	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links