Variant report

Variant	rs16833734
Chromosome Location	chr1:151953278-151953279
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:151881739..151884643-chr1:151951894..151953889,2	K562	blood:
2	chr1:151952034..151953973-chr1:152006565..152009947,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000159445	Chromatin interaction
ENSG00000163191	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11204902	0.80[YRI][hapmap]
rs12060016	0.80[YRI][hapmap];0.95[AFR][1000 genomes]
rs12096506	0.88[AFR][1000 genomes]
rs16833865	1.00[EUR][1000 genomes]
rs16833870	1.00[EUR][1000 genomes]
rs16833876	1.00[EUR][1000 genomes]
rs41363352	1.00[EUR][1000 genomes]
rs56024264	1.00[EUR][1000 genomes]
rs56124007	1.00[EUR][1000 genomes]
rs56156422	1.00[EUR][1000 genomes]
rs57934636	1.00[EUR][1000 genomes]
rs58132665	1.00[EUR][1000 genomes]
rs60525930	1.00[EUR][1000 genomes]
rs6587639	1.00[EUR][1000 genomes]
rs74126341	1.00[EUR][1000 genomes]
rs74126343	1.00[EUR][1000 genomes]
rs74127703	1.00[EUR][1000 genomes]
rs74127885	1.00[EUR][1000 genomes]
rs74127887	1.00[EUR][1000 genomes]
rs74127894	1.00[EUR][1000 genomes]
rs7532162	1.00[EUR][1000 genomes]
rs7548044	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007097	chr1:151832796-152227977	Strong transcription Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
2	nsv1012327	chr1:151835544-152200890	Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
3	nsv535159	chr1:151835544-152200890	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
4	nsv547852	chr1:151843044-151955230	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
5	nsv872441	chr1:151850072-152034430	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	191 gene(s)	inside rSNPs	diseases
6	nsv2855	chr1:151936470-151966381	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151934600-151953400	Weak transcription	Psoas Muscle	Psoas
2	chr1:151941000-151953400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr1:151941000-151953400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr1:151941000-151954800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr1:151941200-151955200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:151941600-151961200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:151941800-151953600	Weak transcription	Gastric	stomach
8	chr1:151941800-151956200	Weak transcription	Pancreas	Pancrea
9	chr1:151945400-151953400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr1:151945600-151953600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr1:151945600-151953800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr1:151945600-151953800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr1:151946000-151954800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr1:151946000-151954800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr1:151946200-151954800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr1:151946200-151954800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr1:151946200-151956200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr1:151946600-151957000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr1:151946600-151958800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr1:151947600-151953400	Enhancers	Placenta Amnion	Placenta Amnion
21	chr1:151948000-151956200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr1:151948400-151955200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr1:151949000-151953400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr1:151949200-151963200	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr1:151949800-151953400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr1:151949800-151953600	Weak transcription	Liver	Liver
27	chr1:151949800-151954800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr1:151949800-151957200	Weak transcription	Stomach Mucosa	stomach
29	chr1:151950000-151953400	Weak transcription	Esophagus	oesophagus
30	chr1:151950000-151953600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr1:151950000-151956600	Genic enhancers	A549	lung
32	chr1:151950400-151953800	Weak transcription	Right Ventricle	heart
33	chr1:151950600-151954800	Weak transcription	Small Intestine	intestine
34	chr1:151950800-151954000	Weak transcription	Primary B cells from peripheral blood	blood
35	chr1:151951000-151961800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr1:151951200-151954800	Weak transcription	HepG2	liver
37	chr1:151951400-151954000	Enhancers	Placenta	Placenta
38	chr1:151951600-151953400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr1:151951600-151953800	Weak transcription	Thymus	Thymus
40	chr1:151951600-151960800	Weak transcription	Fetal Thymus	thymus
41	chr1:151951800-151953400	Weak transcription	Dnd41	blood
42	chr1:151951800-151961800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr1:151952400-151953400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr1:151952400-151953400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr1:151952400-151953400	Enhancers	HSMM	muscle
46	chr1:151952400-151953600	Enhancers	HUVEC	blood vessel
47	chr1:151952400-151954000	Enhancers	Colon Smooth Muscle	Colon
48	chr1:151952400-151954000	Enhancers	Right Atrium	heart
49	chr1:151952400-151954000	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr1:151952400-151954000	Enhancers	HSMMtube	muscle

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