Variant report

Variant	rs16833876
Chromosome Location	chr1:152152329-152152330
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:152140940..152143889-chr1:152152084..152153950,2	MCF-7	breast:
2	chr1:152145123..152147434-chr1:152151128..152152716,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10494272	0.81[AMR][1000 genomes]
rs11204930	1.00[AMR][1000 genomes]
rs11204983	1.00[EUR][1000 genomes]
rs12067755	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1496043	1.00[MEX][hapmap];0.81[MKK][hapmap]
rs1603343	1.00[AMR][1000 genomes]
rs16833734	1.00[EUR][1000 genomes]
rs16833865	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16833870	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1858481	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1908638	1.00[AMR][1000 genomes]
rs28655434	1.00[EUR][1000 genomes]
rs3120654	1.00[EUR][1000 genomes]
rs3126087	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs3126093	1.00[EUR][1000 genomes]
rs3134871	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs41363352	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56024264	1.00[EUR][1000 genomes]
rs56106510	1.00[EUR][1000 genomes]
rs56124007	1.00[EUR][1000 genomes]
rs56156422	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56244386	1.00[EUR][1000 genomes]
rs57272962	1.00[EUR][1000 genomes]
rs57934636	1.00[EUR][1000 genomes]
rs58132665	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58788896	1.00[EUR][1000 genomes]
rs58823849	1.00[EUR][1000 genomes]
rs60525930	1.00[EUR][1000 genomes]
rs60709044	1.00[EUR][1000 genomes]
rs6587639	1.00[EUR][1000 genomes]
rs74126341	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126343	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74127703	1.00[EUR][1000 genomes]
rs74127885	1.00[EUR][1000 genomes]
rs74127887	1.00[EUR][1000 genomes]
rs74127894	1.00[EUR][1000 genomes]
rs74127895	1.00[EUR][1000 genomes]
rs74127917	1.00[EUR][1000 genomes]
rs74127918	1.00[EUR][1000 genomes]
rs74129414	1.00[EUR][1000 genomes]
rs74129429	1.00[EUR][1000 genomes]
rs74129447	1.00[EUR][1000 genomes]
rs74129458	1.00[EUR][1000 genomes]
rs74129459	1.00[EUR][1000 genomes]
rs74129463	1.00[EUR][1000 genomes]
rs74129464	1.00[EUR][1000 genomes]
rs74129466	1.00[EUR][1000 genomes]
rs7548044	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007097	chr1:151832796-152227977	Strong transcription Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
2	nsv1012327	chr1:151835544-152200890	Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
3	nsv535159	chr1:151835544-152200890	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
4	nsv547853	chr1:152008671-152236760	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
5	nsv872442	chr1:152054120-152187641	Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv547854	chr1:152145661-152165878	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152151600-152152800	Enhancers	NHEK	skin
2	chr1:152151800-152152800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:152151800-152152800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:152151800-152153400	Enhancers	HMEC	breast
5	chr1:152151800-152158600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr1:152152000-152152400	Enhancers	Esophagus	oesophagus
7	chr1:152152000-152152400	Enhancers	Osteobl	bone
8	chr1:152152000-152152600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:152152000-152152600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr1:152152000-152152600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:152152000-152152800	Enhancers	Spleen	Spleen
12	chr1:152152000-152152800	Enhancers	NHDF-Ad	bronchial
13	chr1:152152200-152153600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:152152200-152154800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:152152200-152161200	Weak transcription	Right Atrium	heart

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